Variant report

Variant	rs9663530
Chromosome Location	chr10:91098170-91098171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91092210..91094053-chr10:91096573..91099425,2	K562	blood:
2	chr10:91087360..91089183-chr10:91097130..91099730,2	MCF-7	breast:
3	chr10:91093291..91095702-chr10:91097071..91099553,2	MCF-7	breast:
4	chr10:91097289..91100504-chr10:91101597..91104556,3	K562	blood:

Variant related genes	Relation type
ENSG00000119917	Chromatin interaction
ENSG00000107798	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11185734	1.00[CEU][hapmap]
rs11185736	1.00[CEU][hapmap]
rs11203076	1.00[CEU][hapmap]
rs11203087	1.00[CEU][hapmap]
rs11203141	1.00[CEU][hapmap]
rs11813257	1.00[CEU][hapmap]
rs11816805	1.00[CEU][hapmap]
rs12257062	1.00[CEU][hapmap]
rs1332334	1.00[CEU][hapmap]
rs1332338	1.00[CEU][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17118228	1.00[CEU][hapmap]
rs17120040	1.00[CEU][hapmap]
rs17121282	1.00[EUR][1000 genomes]
rs17121936	1.00[CEU][hapmap]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	1.00[EUR][1000 genomes]
rs58250701	1.00[EUR][1000 genomes]
rs58761256	1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60411920	1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7080667	1.00[CEU][hapmap]
rs7082073	1.00[CEU][hapmap]
rs7093054	1.00[CEU][hapmap]
rs7101353	1.00[CEU][hapmap]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	1.00[EUR][1000 genomes]
rs73367489	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73369738	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73369750	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73369762	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73369777	1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7898580	1.00[CEU][hapmap]
rs7907230	1.00[CEU][hapmap]
rs7920187	1.00[EUR][1000 genomes]
rs7920492	1.00[EUR][1000 genomes]
rs7923948	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7924077	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91088000-91099800	Weak transcription	Gastric	stomach
2	chr10:91090200-91107600	Weak transcription	Pancreas	Pancrea
3	chr10:91093400-91100200	Weak transcription	K562	blood
4	chr10:91093400-91100800	Weak transcription	Right Ventricle	heart
5	chr10:91093800-91099000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:91093800-91106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:91093800-91106400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:91094000-91098200	Weak transcription	HSMM	muscle
9	chr10:91094000-91098400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:91094000-91101000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:91094000-91102000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:91094000-91102200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:91094000-91103400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:91094000-91105400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:91094000-91110200	Weak transcription	Colonic Mucosa	Colon
16	chr10:91094000-91112000	Weak transcription	Esophagus	oesophagus
17	chr10:91094200-91098200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:91094200-91098600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:91094200-91099200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:91094200-91101400	Weak transcription	Osteobl	bone
21	chr10:91094200-91102000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:91094200-91102000	Weak transcription	NHDF-Ad	bronchial
23	chr10:91094200-91103400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:91094200-91106800	Weak transcription	Fetal Kidney	kidney
25	chr10:91094200-91108400	Weak transcription	Stomach Mucosa	stomach
26	chr10:91094600-91100800	Weak transcription	Right Atrium	heart
27	chr10:91095000-91098600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:91095200-91098200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:91095200-91098200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:91095200-91102000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:91095200-91110400	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:91095600-91105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:91096200-91100400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:91096200-91100400	Weak transcription	Thymus	Thymus
35	chr10:91096200-91100800	Strong transcription	Fetal Muscle Leg	muscle
36	chr10:91096200-91101200	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr10:91096400-91098200	Genic enhancers	Brain Inferior Temporal Lobe	brain
38	chr10:91096400-91100200	Strong transcription	Liver	Liver
39	chr10:91096600-91101200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:91096600-91101200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:91096600-91101200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:91096600-91101200	Strong transcription	Fetal Muscle Trunk	muscle
43	chr10:91096600-91101400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr10:91096800-91098800	Strong transcription	Fetal Intestine Small	intestine
45	chr10:91096800-91099600	Strong transcription	Fetal Intestine Large	intestine
46	chr10:91096800-91100200	Strong transcription	Fetal Stomach	stomach
47	chr10:91097200-91098400	Genic enhancers	Brain Anterior Caudate	brain
48	chr10:91097200-91098400	Genic enhancers	Brain Substantia Nigra	brain
49	chr10:91097200-91099000	Genic enhancers	Brain Cingulate Gyrus	brain
50	chr10:91097200-91101200	Strong transcription	Primary neutrophils fromperipheralblood	blood

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