Variant report

Variant	rs11203087
Chromosome Location	chr10:91110529-91110530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91109558..91111434-chr10:91113140..91114686,2	MCF-7	breast:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10159512	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10159652	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159694	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159869	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159879	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11185734	1.00[CEU][hapmap]
rs11185736	1.00[CEU][hapmap]
rs11203074	0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203075	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203076	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11203077	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203081	0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203084	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203085	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203093	0.83[EUR][1000 genomes]
rs11203095	0.83[EUR][1000 genomes]
rs11203141	1.00[CEU][hapmap]
rs11813257	1.00[CEU][hapmap]
rs11816805	1.00[CEU][hapmap]
rs12241343	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12242568	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12243051	0.83[EUR][1000 genomes]
rs12243721	0.83[EUR][1000 genomes]
rs12243856	0.83[EUR][1000 genomes]
rs12244506	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12244571	0.94[AFR][1000 genomes]
rs12245627	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12245646	0.83[EUR][1000 genomes]
rs12250550	0.83[EUR][1000 genomes]
rs12250610	0.83[EUR][1000 genomes]
rs12250753	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12250860	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12251678	0.83[EUR][1000 genomes]
rs12251895	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12256540	0.83[EUR][1000 genomes]
rs12256980	1.00[AFR][1000 genomes]
rs12257062	1.00[CEU][hapmap]
rs12259713	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12259768	0.85[AFR][1000 genomes]
rs12259825	0.83[EUR][1000 genomes]
rs12259887	0.83[EUR][1000 genomes]
rs12261273	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263019	0.83[EUR][1000 genomes]
rs12263584	0.83[EUR][1000 genomes]
rs12266581	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12269110	0.83[EUR][1000 genomes]
rs1332332	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332333	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332334	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1332337	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332338	1.00[CEU][hapmap]
rs17118228	1.00[CEU][hapmap]
rs17119593	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119665	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119672	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119790	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119791	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17120040	1.00[CEU][hapmap]
rs17121936	1.00[CEU][hapmap]
rs41284140	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59633641	0.83[EUR][1000 genomes]
rs6586185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6586186	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6586189	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586190	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7074809	0.83[EUR][1000 genomes]
rs7079179	0.83[EUR][1000 genomes]
rs7080667	1.00[CEU][hapmap]
rs7081163	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7082073	1.00[CEU][hapmap]
rs7088379	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7090951	0.83[EUR][1000 genomes]
rs7091558	0.85[AMR][1000 genomes]
rs7093054	1.00[CEU][hapmap]
rs7099668	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7099681	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7100115	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7101353	1.00[CEU][hapmap]
rs73367441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73367444	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367447	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73368528	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7898580	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7901862	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7902096	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7902109	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7902380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904924	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7906827	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7907230	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes]
rs7907341	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7910157	0.83[EUR][1000 genomes]
rs7911396	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7916398	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7917725	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7919999	0.83[EUR][1000 genomes]
rs7923948	1.00[CEU][hapmap]
rs9663337	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9663529	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9663530	1.00[CEU][hapmap]
rs9663533	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91094000-91112000	Weak transcription	Esophagus	oesophagus
2	chr10:91098800-91111200	Weak transcription	Aorta	Aorta
3	chr10:91099400-91111000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:91099600-91110800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:91099800-91111000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:91100000-91111000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr10:91101200-91111200	Weak transcription	Ovary	ovary
8	chr10:91101600-91110800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:91105000-91112400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:91105600-91111200	Enhancers	Liver	Liver
11	chr10:91105600-91111200	Enhancers	Fetal Intestine Small	intestine
12	chr10:91105600-91111400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:91105600-91112400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr10:91105800-91113200	Enhancers	Fetal Intestine Large	intestine
15	chr10:91106000-91110800	Enhancers	Adipose Nuclei	Adipose
16	chr10:91106000-91112600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:91106200-91113400	Enhancers	Fetal Heart	heart
18	chr10:91106400-91112400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:91106400-91113200	Enhancers	Placenta	Placenta
20	chr10:91106600-91110600	Weak transcription	HSMM	muscle
21	chr10:91106600-91111200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:91106600-91111400	Weak transcription	HMEC	breast
23	chr10:91106800-91110800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:91106800-91111000	Weak transcription	NHEK	skin
25	chr10:91106800-91111400	Enhancers	Fetal Kidney	kidney
26	chr10:91106800-91111400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr10:91107800-91111800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:91108000-91111200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr10:91108000-91111200	Weak transcription	Pancreas	Pancrea
30	chr10:91108200-91111800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:91108400-91110600	Weak transcription	Fetal Brain Female	brain
32	chr10:91108400-91110800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:91108400-91110800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:91108400-91110800	Weak transcription	Fetal Stomach	stomach
35	chr10:91108400-91111200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:91108400-91111200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:91108400-91111400	Weak transcription	Brain Germinal Matrix	brain
38	chr10:91108400-91111600	Weak transcription	Fetal Brain Male	brain
39	chr10:91108400-91112200	Weak transcription	Lung	lung
40	chr10:91108400-91113000	Enhancers	Stomach Mucosa	stomach
41	chr10:91108600-91111200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:91108600-91111200	Weak transcription	Brain Angular Gyrus	brain
43	chr10:91108600-91111200	Weak transcription	Right Atrium	heart
44	chr10:91108600-91111400	Weak transcription	Brain Anterior Caudate	brain
45	chr10:91108600-91122200	Weak transcription	Spleen	Spleen
46	chr10:91109000-91110600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:91109000-91110600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:91109000-91110800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr10:91109000-91110800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:91109000-91110800	Weak transcription	Left Ventricle	heart

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