Variant report

Variant	rs73368528
Chromosome Location	chr10:91092278-91092279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91086403..91089519-chr10:91091273..91094339,4	K562	blood:

Variant related genes	Relation type
ENSG00000119917	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10159512	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159516	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10159652	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159694	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159717	0.86[EUR][1000 genomes]
rs10159869	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159879	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203074	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203075	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11203077	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203081	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203082	0.86[EUR][1000 genomes]
rs11203083	0.86[EUR][1000 genomes]
rs11203084	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203085	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203087	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12241343	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12242568	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12244506	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12244571	0.93[AFR][1000 genomes]
rs12245627	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12250753	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12250860	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12251895	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12256980	0.99[AFR][1000 genomes]
rs12259713	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12259768	0.84[AFR][1000 genomes]
rs12261273	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12266581	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332332	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332333	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332334	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1332337	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119593	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119665	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119672	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119790	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119791	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs41284140	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586185	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6586186	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586187	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6586189	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586190	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7081163	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7088379	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7091558	0.85[AMR][1000 genomes]
rs7099668	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7099681	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7100115	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367441	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367444	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367447	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367460	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7898580	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7901862	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7902096	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7902109	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7902380	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7904924	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7906827	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7907230	0.99[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7907341	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7911396	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7916398	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7917725	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9663337	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9663529	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9663533	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91087200-91093600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:91088000-91099800	Weak transcription	Gastric	stomach
3	chr10:91088200-91092400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:91088200-91093200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:91088200-91093400	Weak transcription	Esophagus	oesophagus
6	chr10:91088800-91092600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:91089400-91092800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:91090000-91092400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:91090200-91107600	Weak transcription	Pancreas	Pancrea
10	chr10:91090400-91092600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:91090400-91092600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:91090600-91092600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr10:91091000-91092400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:91091200-91094000	Enhancers	Fetal Brain Male	brain
15	chr10:91091400-91092400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:91091400-91092800	Weak transcription	Spleen	Spleen
17	chr10:91091600-91093400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr10:91091600-91094200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:91091800-91092400	Active TSS	Fetal Intestine Small	intestine
20	chr10:91091800-91092400	Enhancers	Small Intestine	intestine
21	chr10:91091800-91092600	Active TSS	Colon Smooth Muscle	Colon
22	chr10:91091800-91092600	Flanking Active TSS	Dnd41	blood
23	chr10:91091800-91092800	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr10:91091800-91092800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr10:91091800-91092800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:91091800-91092800	Flanking Active TSS	Fetal Kidney	kidney
27	chr10:91091800-91092800	Flanking Active TSS	Fetal Lung	lung
28	chr10:91091800-91092800	Active TSS	Rectal Smooth Muscle	rectum
29	chr10:91091800-91092800	Active TSS	GM12878-XiMat	blood
30	chr10:91091800-91093000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:91091800-91093000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
32	chr10:91091800-91093000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr10:91091800-91093000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:91091800-91093000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr10:91091800-91093000	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr10:91091800-91093200	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr10:91091800-91093200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr10:91091800-91093200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:91091800-91093200	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr10:91091800-91093200	Active TSS	Ovary	ovary
41	chr10:91091800-91093200	Flanking Active TSS	HepG2	liver
42	chr10:91091800-91093400	Flanking Active TSS	Brain Substantia Nigra	brain
43	chr10:91091800-91093400	Flanking Active TSS	Osteobl	bone
44	chr10:91091800-91093600	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr10:91091800-91093600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr10:91091800-91093600	Flanking Active TSS	NHEK	skin
47	chr10:91091800-91093800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
48	chr10:91091800-91093800	Flanking Active TSS	Primary B cells from cord blood	blood
49	chr10:91091800-91094000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr10:91091800-91094000	Enhancers	Cortex derived primary cultured neurospheres	brain

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