Variant report

Variant	rs7898580
Chromosome Location	chr10:91093682-91093683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91086403..91089519-chr10:91091273..91094339,4	K562	blood:
2	chr10:91093291..91095702-chr10:91097071..91099553,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119917	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10159512	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159516	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159652	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159869	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159879	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1041540	1.00[ASN][1000 genomes]
rs11185734	1.00[CEU][hapmap]
rs11185736	1.00[CEU][hapmap]
rs11203074	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203076	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203077	0.80[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203081	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203085	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203087	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203088	1.00[ASN][1000 genomes]
rs11203097	1.00[ASN][1000 genomes]
rs11203141	1.00[CEU][hapmap]
rs11813257	1.00[CEU][hapmap]
rs11816805	1.00[CEU][hapmap]
rs12241343	0.80[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242568	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244506	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12244571	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249661	1.00[ASN][1000 genomes]
rs12249707	1.00[ASN][1000 genomes]
rs12250753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251895	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256980	0.94[AFR][1000 genomes]
rs12257062	1.00[CEU][hapmap]
rs12259713	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259768	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263989	1.00[ASN][1000 genomes]
rs12264051	1.00[ASN][1000 genomes]
rs12266581	0.80[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267943	1.00[ASN][1000 genomes]
rs1332332	0.80[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332333	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332334	1.00[CEU][hapmap];0.80[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332336	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332337	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332338	1.00[CEU][hapmap]
rs17118228	1.00[CEU][hapmap]
rs17119593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119665	0.80[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119672	0.80[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119790	0.80[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119791	0.80[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17120040	1.00[CEU][hapmap]
rs17121936	1.00[CEU][hapmap]
rs2151008	1.00[ASN][1000 genomes]
rs41284140	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284142	1.00[ASN][1000 genomes]
rs4378299	1.00[ASN][1000 genomes]
rs6586185	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586186	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586187	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586189	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586190	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586191	1.00[ASN][1000 genomes]
rs7080667	1.00[CEU][hapmap]
rs7081163	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082073	1.00[CEU][hapmap]
rs7088379	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093054	1.00[CEU][hapmap]
rs7099668	0.80[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099681	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100115	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101353	1.00[CEU][hapmap]
rs73367441	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367444	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73367447	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73367460	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73368528	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7901862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902096	0.80[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902380	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7904924	0.80[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906827	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7907230	1.00[CEU][hapmap];0.94[AFR][1000 genomes]
rs7907341	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911396	0.80[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923948	1.00[CEU][hapmap]
rs9663337	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663530	1.00[CEU][hapmap]
rs9663533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91088000-91099800	Weak transcription	Gastric	stomach
2	chr10:91090200-91107600	Weak transcription	Pancreas	Pancrea
3	chr10:91091200-91094000	Enhancers	Fetal Brain Male	brain
4	chr10:91091600-91094200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:91091800-91093800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
6	chr10:91091800-91093800	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr10:91091800-91094000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr10:91091800-91094000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:91091800-91094000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:91091800-91094000	Flanking Active TSS	Brain Anterior Caudate	brain
11	chr10:91091800-91094200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:91091800-91094200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr10:91091800-91094200	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr10:91091800-91094200	Flanking Active TSS	Liver	Liver
15	chr10:91091800-91094200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr10:91092000-91094000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:91092000-91094000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr10:91092000-91094000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr10:91092000-91094200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:91092000-91094200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr10:91092000-91094200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr10:91092000-91094200	Flanking Active TSS	Fetal Thymus	thymus
23	chr10:91092200-91094000	Enhancers	Fetal Heart	heart
24	chr10:91092200-91094200	Enhancers	H9 Cell Line	embryonic stem cell
25	chr10:91092200-91094200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:91092200-91094200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr10:91092200-91094200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr10:91092200-91094200	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr10:91092200-91094200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:91092200-91094200	Enhancers	HMEC	breast
31	chr10:91092400-91093800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr10:91092400-91094000	Enhancers	H1 Cell Line	embryonic stem cell
33	chr10:91092400-91094000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:91092400-91094000	Flanking Active TSS	Fetal Intestine Small	intestine
35	chr10:91092400-91094200	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:91092400-91094200	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr10:91092400-91094200	Flanking Active TSS	Fetal Muscle Leg	muscle
38	chr10:91092600-91093800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:91092600-91093800	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr10:91092600-91093800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr10:91092600-91094000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr10:91092600-91094000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:91092600-91094000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:91092600-91094000	Flanking Active TSS	Fetal Intestine Large	intestine
45	chr10:91092600-91094200	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr10:91092600-91095000	Enhancers	Dnd41	blood
47	chr10:91092600-91095600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr10:91092800-91093800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:91092800-91093800	Flanking Active TSS	NHDF-Ad	bronchial
50	chr10:91092800-91094000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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