Variant report

Variant	rs11203097
Chromosome Location	chr10:91135931-91135932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10159512	1.00[ASN][1000 genomes]
rs10159652	1.00[ASN][1000 genomes]
rs10159694	1.00[ASN][1000 genomes]
rs10159869	1.00[ASN][1000 genomes]
rs10159879	1.00[ASN][1000 genomes]
rs1041540	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203074	1.00[ASN][1000 genomes]
rs11203075	1.00[ASN][1000 genomes]
rs11203077	1.00[ASN][1000 genomes]
rs11203081	1.00[ASN][1000 genomes]
rs11203084	1.00[ASN][1000 genomes]
rs11203085	1.00[ASN][1000 genomes]
rs11203088	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203100	1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs12241343	1.00[ASN][1000 genomes]
rs12242568	1.00[ASN][1000 genomes]
rs12244571	1.00[ASN][1000 genomes]
rs12245627	1.00[ASN][1000 genomes]
rs12249661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250753	1.00[ASN][1000 genomes]
rs12250860	1.00[ASN][1000 genomes]
rs12251895	1.00[ASN][1000 genomes]
rs12259713	1.00[ASN][1000 genomes]
rs12259768	1.00[ASN][1000 genomes]
rs12261273	1.00[ASN][1000 genomes]
rs12263989	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264051	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266581	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332332	1.00[ASN][1000 genomes]
rs1332333	1.00[ASN][1000 genomes]
rs1332336	1.00[ASN][1000 genomes]
rs1332337	1.00[ASN][1000 genomes]
rs17119593	1.00[ASN][1000 genomes]
rs17119665	1.00[ASN][1000 genomes]
rs17119672	1.00[ASN][1000 genomes]
rs17119790	1.00[ASN][1000 genomes]
rs17119791	1.00[ASN][1000 genomes]
rs2151008	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284140	1.00[ASN][1000 genomes]
rs41284142	1.00[ASN][1000 genomes]
rs4378299	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6586186	1.00[ASN][1000 genomes]
rs6586189	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586190	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586191	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081163	1.00[ASN][1000 genomes]
rs7088379	1.00[ASN][1000 genomes]
rs7091558	1.00[ASN][1000 genomes]
rs7099668	1.00[ASN][1000 genomes]
rs7099681	1.00[ASN][1000 genomes]
rs7100115	1.00[ASN][1000 genomes]
rs73367444	1.00[ASN][1000 genomes]
rs73367447	1.00[ASN][1000 genomes]
rs7898580	1.00[ASN][1000 genomes]
rs7901862	1.00[ASN][1000 genomes]
rs7902096	1.00[ASN][1000 genomes]
rs7902109	1.00[ASN][1000 genomes]
rs7904924	1.00[ASN][1000 genomes]
rs7907341	1.00[ASN][1000 genomes]
rs7911396	1.00[ASN][1000 genomes]
rs7913002	0.90[EUR][1000 genomes]
rs7916398	1.00[ASN][1000 genomes]
rs7917725	1.00[ASN][1000 genomes]
rs9663337	1.00[ASN][1000 genomes]
rs9663529	1.00[ASN][1000 genomes]
rs9663533	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91129400-91138000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:91134200-91138000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:91134800-91142600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:91135000-91150200	Weak transcription	Fetal Brain Male	brain
5	chr10:91135200-91138200	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:91135800-91137000	Weak transcription	Brain Substantia Nigra	brain
7	chr10:91135800-91140800	Weak transcription	Fetal Heart	heart

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