Variant report

Variant	rs12267943
Chromosome Location	chr10:91115715-91115716
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10159512	1.00[ASN][1000 genomes]
rs10159652	1.00[ASN][1000 genomes]
rs10159694	1.00[ASN][1000 genomes]
rs10159869	1.00[ASN][1000 genomes]
rs10159879	1.00[ASN][1000 genomes]
rs1041540	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203074	1.00[ASN][1000 genomes]
rs11203075	1.00[ASN][1000 genomes]
rs11203077	1.00[ASN][1000 genomes]
rs11203081	1.00[ASN][1000 genomes]
rs11203084	1.00[ASN][1000 genomes]
rs11203085	1.00[ASN][1000 genomes]
rs11203088	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203100	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12241343	1.00[ASN][1000 genomes]
rs12242568	1.00[ASN][1000 genomes]
rs12244571	1.00[ASN][1000 genomes]
rs12245627	1.00[ASN][1000 genomes]
rs12249661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250753	1.00[ASN][1000 genomes]
rs12250860	1.00[ASN][1000 genomes]
rs12251895	1.00[ASN][1000 genomes]
rs12259713	1.00[ASN][1000 genomes]
rs12259768	1.00[ASN][1000 genomes]
rs12261273	1.00[ASN][1000 genomes]
rs12263989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266581	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269110	0.81[AFR][1000 genomes]
rs1332332	1.00[ASN][1000 genomes]
rs1332333	1.00[ASN][1000 genomes]
rs1332336	1.00[ASN][1000 genomes]
rs1332337	1.00[ASN][1000 genomes]
rs17119593	1.00[ASN][1000 genomes]
rs17119665	1.00[ASN][1000 genomes]
rs17119672	1.00[ASN][1000 genomes]
rs17119790	1.00[ASN][1000 genomes]
rs17119791	1.00[ASN][1000 genomes]
rs2151008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284140	1.00[ASN][1000 genomes]
rs41284142	1.00[ASN][1000 genomes]
rs4378299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6586186	1.00[ASN][1000 genomes]
rs6586189	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586190	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586191	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081163	1.00[ASN][1000 genomes]
rs7088379	1.00[ASN][1000 genomes]
rs7091558	1.00[ASN][1000 genomes]
rs7099668	1.00[ASN][1000 genomes]
rs7099681	1.00[ASN][1000 genomes]
rs7100115	1.00[ASN][1000 genomes]
rs73367444	1.00[ASN][1000 genomes]
rs73367447	1.00[ASN][1000 genomes]
rs7898580	1.00[ASN][1000 genomes]
rs7901862	1.00[ASN][1000 genomes]
rs7902096	1.00[ASN][1000 genomes]
rs7902109	1.00[ASN][1000 genomes]
rs7904924	1.00[ASN][1000 genomes]
rs7907341	1.00[ASN][1000 genomes]
rs7911396	1.00[ASN][1000 genomes]
rs7913002	0.90[EUR][1000 genomes]
rs7916398	1.00[ASN][1000 genomes]
rs7917725	1.00[ASN][1000 genomes]
rs9663337	1.00[ASN][1000 genomes]
rs9663529	1.00[ASN][1000 genomes]
rs9663533	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91108600-91122200	Weak transcription	Spleen	Spleen
2	chr10:91112200-91116800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:91112400-91116000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:91112400-91116600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:91112400-91116800	Weak transcription	Fetal Stomach	stomach
6	chr10:91112400-91120000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:91112400-91122400	Weak transcription	Esophagus	oesophagus
8	chr10:91112400-91127400	Weak transcription	Left Ventricle	heart
9	chr10:91113000-91116000	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:91113000-91116600	Weak transcription	GM12878-XiMat	blood
11	chr10:91113000-91116800	Weak transcription	Fetal Kidney	kidney
12	chr10:91113000-91119200	Weak transcription	Lung	lung
13	chr10:91113200-91122200	Weak transcription	Placenta	Placenta
14	chr10:91113400-91116000	Weak transcription	K562	blood
15	chr10:91113400-91116800	Weak transcription	Fetal Heart	heart
16	chr10:91114400-91117000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:91114600-91117200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:91114600-91117400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:91114800-91116800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:91114800-91117200	Enhancers	NHLF	lung
21	chr10:91114800-91117400	Enhancers	NHDF-Ad	bronchial
22	chr10:91115000-91116000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:91115000-91116400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:91115000-91117200	Enhancers	Osteobl	bone
25	chr10:91115200-91116600	Weak transcription	NH-A	brain
26	chr10:91115400-91116000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:91115400-91116200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:91115400-91116600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:91115400-91117200	Enhancers	Brain Germinal Matrix	brain
30	chr10:91115400-91117400	Enhancers	Fetal Lung	lung

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