Variant report

Variant	rs7081163
Chromosome Location	chr10:91107544-91107545
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10159512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159516	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159652	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159694	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159869	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10159879	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1041540	1.00[ASN][1000 genomes]
rs11203074	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203075	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203076	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203077	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203087	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203088	1.00[ASN][1000 genomes]
rs11203097	1.00[ASN][1000 genomes]
rs12241343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12244506	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12244571	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245627	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249661	1.00[ASN][1000 genomes]
rs12249707	1.00[ASN][1000 genomes]
rs12250753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12250860	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12251895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12256980	0.86[AFR][1000 genomes]
rs12259713	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259768	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261273	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263989	1.00[ASN][1000 genomes]
rs12264051	1.00[ASN][1000 genomes]
rs12266581	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12267943	1.00[ASN][1000 genomes]
rs1332332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332334	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332336	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119593	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119665	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17119791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151008	1.00[ASN][1000 genomes]
rs41284140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41284142	1.00[ASN][1000 genomes]
rs4378299	1.00[ASN][1000 genomes]
rs6586185	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586187	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586189	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586190	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586191	1.00[ASN][1000 genomes]
rs7088379	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099668	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099681	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73367441	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367444	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73367447	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73367460	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73368528	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7898580	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901862	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902096	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902380	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7904924	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906827	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7907230	0.86[AFR][1000 genomes]
rs7907341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916398	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917725	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663529	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663533	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91090200-91107600	Weak transcription	Pancreas	Pancrea
2	chr10:91094000-91110200	Weak transcription	Colonic Mucosa	Colon
3	chr10:91094000-91112000	Weak transcription	Esophagus	oesophagus
4	chr10:91094200-91108400	Weak transcription	Stomach Mucosa	stomach
5	chr10:91095200-91110400	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:91098800-91111200	Weak transcription	Aorta	Aorta
7	chr10:91099400-91107800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:91099400-91111000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:91099600-91110400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:91099600-91110800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:91099800-91110400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:91099800-91111000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr10:91100000-91107600	Weak transcription	Fetal Thymus	thymus
14	chr10:91100000-91110400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr10:91100000-91111000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr10:91100600-91110400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:91101200-91110000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:91101200-91111200	Weak transcription	Ovary	ovary
19	chr10:91101600-91110800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr10:91102600-91110400	Weak transcription	NH-A	brain
21	chr10:91102800-91110400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:91104000-91107600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:91104200-91107600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:91105000-91112400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr10:91105400-91108000	Enhancers	Hela-S3	cervix
26	chr10:91105400-91108400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr10:91105400-91109000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:91105400-91109000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr10:91105400-91109000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr10:91105400-91109200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr10:91105400-91109400	Enhancers	HepG2	liver
32	chr10:91105400-91109800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr10:91105600-91108200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:91105600-91108600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:91105600-91109400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:91105600-91109600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:91105600-91111200	Enhancers	Liver	Liver
38	chr10:91105600-91111200	Enhancers	Fetal Intestine Small	intestine
39	chr10:91105600-91111400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr10:91105600-91112400	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr10:91105800-91113200	Enhancers	Fetal Intestine Large	intestine
42	chr10:91106000-91108200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:91106000-91108200	Enhancers	Muscle Satellite Cultured Cells	--
44	chr10:91106000-91108200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:91106000-91108800	Enhancers	NHDF-Ad	bronchial
46	chr10:91106000-91109000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:91106000-91110800	Enhancers	Adipose Nuclei	Adipose
48	chr10:91106000-91112600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:91106200-91108400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:91106200-91108400	Enhancers	Fetal Brain Male	brain

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