Variant report

Variant	rs7907230
Chromosome Location	chr10:91095510-91095511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91093291..91095702-chr10:91097071..91099553,2	MCF-7	breast:
2	chr10:91094086..91096049-chr10:91100539..91102838,2	MCF-7	breast:
3	chr10:91092012..91093700-chr10:91094311..91097149,2	K562	blood:

Variant related genes	Relation type
ENSG00000107798	Chromatin interaction
ENSG00000119917	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10159512	0.86[AFR][1000 genomes]
rs10159516	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10159652	0.85[AFR][1000 genomes]
rs10159694	0.85[AFR][1000 genomes]
rs10159869	0.84[AFR][1000 genomes]
rs10159879	0.84[AFR][1000 genomes]
rs11185734	1.00[CEU][hapmap]
rs11185736	1.00[CEU][hapmap]
rs11203074	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11203075	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11203076	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11203077	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11203081	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs11203084	0.86[AFR][1000 genomes]
rs11203085	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs11203087	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes]
rs11203091	1.00[TSI][hapmap]
rs11203141	1.00[CEU][hapmap]
rs11813257	1.00[CEU][hapmap]
rs11816805	1.00[CEU][hapmap]
rs12241343	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12242568	0.89[AFR][1000 genomes]
rs12244506	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12244571	0.94[AFR][1000 genomes]
rs12245627	0.94[AFR][1000 genomes]
rs12245646	1.00[TSI][hapmap]
rs12250753	0.94[AFR][1000 genomes]
rs12250860	0.94[AFR][1000 genomes]
rs12251895	0.86[AFR][1000 genomes]
rs12256980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12257062	1.00[CEU][hapmap]
rs12259713	0.89[AFR][1000 genomes]
rs12259768	0.85[AFR][1000 genomes]
rs12261273	0.94[AFR][1000 genomes]
rs12266581	0.91[ASW][hapmap];0.86[LWK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs1332332	0.91[ASW][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs1332333	0.86[AFR][1000 genomes]
rs1332334	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1332337	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs1332338	1.00[CEU][hapmap]
rs17118228	1.00[CEU][hapmap]
rs17119593	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17119665	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17119672	0.91[ASW][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs17119790	0.91[ASW][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs17119791	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs17120040	1.00[CEU][hapmap]
rs17121936	1.00[CEU][hapmap]
rs41284140	0.86[AFR][1000 genomes]
rs6586185	0.95[AFR][1000 genomes]
rs6586186	0.86[AFR][1000 genomes]
rs6586187	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6586189	0.84[AFR][1000 genomes]
rs6586190	0.86[AFR][1000 genomes]
rs7080667	1.00[CEU][hapmap]
rs7081163	0.86[AFR][1000 genomes]
rs7082073	1.00[CEU][hapmap]
rs7088379	0.92[AFR][1000 genomes]
rs7093054	1.00[CEU][hapmap]
rs7099668	0.91[ASW][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs7099681	0.85[AFR][1000 genomes]
rs7100115	0.86[AFR][1000 genomes]
rs7101353	1.00[CEU][hapmap]
rs73367441	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73367444	0.85[AFR][1000 genomes]
rs73367447	0.85[AFR][1000 genomes]
rs73367460	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73368528	0.99[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7898580	1.00[CEU][hapmap];0.94[AFR][1000 genomes]
rs7901862	0.94[AFR][1000 genomes]
rs7902096	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7902109	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7902380	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7904924	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7906827	0.84[AFR][1000 genomes]
rs7907341	0.86[AFR][1000 genomes]
rs7910157	1.00[TSI][hapmap]
rs7910817	1.00[TSI][hapmap]
rs7911396	0.91[ASW][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs7916398	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7917725	0.94[AFR][1000 genomes]
rs7923948	1.00[CEU][hapmap]
rs9663337	0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs9663529	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9663530	1.00[CEU][hapmap]
rs9663533	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91088000-91099800	Weak transcription	Gastric	stomach
2	chr10:91090200-91107600	Weak transcription	Pancreas	Pancrea
3	chr10:91092600-91095600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:91092800-91095600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr10:91093200-91095600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:91093400-91095600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:91093400-91097200	Enhancers	Brain Substantia Nigra	brain
8	chr10:91093400-91097800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:91093400-91100200	Weak transcription	K562	blood
10	chr10:91093400-91100800	Weak transcription	Right Ventricle	heart
11	chr10:91093600-91096600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:91093800-91097200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:91093800-91097400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:91093800-91099000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr10:91093800-91106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:91093800-91106400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:91094000-91095600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:91094000-91095800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:91094000-91095800	Enhancers	Fetal Intestine Large	intestine
20	chr10:91094000-91096200	Weak transcription	Hela-S3	cervix
21	chr10:91094000-91097200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr10:91094000-91097200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:91094000-91097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:91094000-91097200	Enhancers	Brain Anterior Caudate	brain
25	chr10:91094000-91097200	Weak transcription	NH-A	brain
26	chr10:91094000-91097400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:91094000-91097400	Weak transcription	NHLF	lung
28	chr10:91094000-91098000	Weak transcription	HSMMtube	muscle
29	chr10:91094000-91098200	Weak transcription	HSMM	muscle
30	chr10:91094000-91098400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:91094000-91101000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:91094000-91102000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:91094000-91102200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:91094000-91103400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:91094000-91105400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:91094000-91110200	Weak transcription	Colonic Mucosa	Colon
37	chr10:91094000-91112000	Weak transcription	Esophagus	oesophagus
38	chr10:91094200-91095600	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr10:91094200-91095600	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr10:91094200-91095800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr10:91094200-91096200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:91094200-91096600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:91094200-91096600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:91094200-91096600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:91094200-91096600	Enhancers	Adipose Nuclei	Adipose
46	chr10:91094200-91096600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:91094200-91096800	Weak transcription	Fetal Stomach	stomach
48	chr10:91094200-91096800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr10:91094200-91096800	Weak transcription	HMEC	breast
50	chr10:91094200-91096800	Weak transcription	NHEK	skin

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