Variant report

Variant	rs17118228
Chromosome Location	chr10:91020946-91020947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91003937..91005930-chr10:91020803..91022906,2	K562	blood:
2	chr10:91020387..91022060-chr10:91024157..91025732,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266769	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11203076	1.00[CEU][hapmap]
rs11203087	1.00[CEU][hapmap]
rs11816805	1.00[CEU][hapmap]
rs12257062	1.00[CEU][hapmap]
rs1332334	1.00[CEU][hapmap]
rs1332338	1.00[CEU][hapmap]
rs17120040	1.00[CEU][hapmap]
rs17121936	1.00[CEU][hapmap]
rs7075004	1.00[MEX][hapmap]
rs7093054	1.00[CEU][hapmap]
rs7898580	1.00[CEU][hapmap]
rs7907230	1.00[CEU][hapmap]
rs7923948	1.00[CEU][hapmap]
rs9663530	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv895882	chr10:91002927-91021645	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv947683	chr10:91020881-91035791	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91011400-91021600	Weak transcription	Fetal Brain Male	brain
2	chr10:91012000-91021800	Weak transcription	Right Atrium	heart
3	chr10:91014400-91023400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:91019600-91021000	Enhancers	Brain Hippocampus Middle	brain
5	chr10:91019800-91022400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr10:91020000-91021000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:91020000-91021000	Enhancers	Brain Anterior Caudate	brain
8	chr10:91020000-91021000	Enhancers	Fetal Lung	lung
9	chr10:91020000-91021200	Enhancers	Brain Substantia Nigra	brain
10	chr10:91020000-91022000	Enhancers	Hela-S3	cervix
11	chr10:91020000-91023200	Enhancers	HMEC	breast
12	chr10:91020000-91023600	Enhancers	Brain Angular Gyrus	brain
13	chr10:91020000-91023600	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:91020000-91023600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:91020000-91023600	Enhancers	NHEK	skin
16	chr10:91020000-91024000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:91020200-91021000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:91020200-91021000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:91020200-91021000	Enhancers	Placenta	Placenta
20	chr10:91020200-91022400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:91020200-91023000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:91020200-91023000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:91020200-91023200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:91020200-91024200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr10:91020400-91021000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:91020400-91021000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:91020400-91021000	Enhancers	HSMM	muscle
28	chr10:91020400-91021200	Enhancers	NHLF	lung
29	chr10:91020400-91022200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:91020400-91022600	Enhancers	A549	lung
31	chr10:91020400-91023000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr10:91020400-91023400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:91020400-91023600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:91020400-91023600	Enhancers	NHDF-Ad	bronchial
35	chr10:91020400-91023800	Enhancers	Osteobl	bone
36	chr10:91020600-91021200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr10:91020600-91022000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:91020600-91023400	Weak transcription	Pancreas	Pancrea
39	chr10:91020600-91024200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:91020600-91025400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr10:91020600-91027800	Weak transcription	Right Ventricle	heart
42	chr10:91020600-91035000	Weak transcription	Esophagus	oesophagus
43	chr10:91020800-91021000	Enhancers	HepG2	liver
44	chr10:91020800-91021200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:91020800-91021400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr10:91020800-91021800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:91020800-91021800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:91020800-91021800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:91020800-91021800	Weak transcription	Adipose Nuclei	Adipose
50	chr10:91020800-91021800	Weak transcription	Fetal Intestine Small	intestine

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