Variant report

Variant	rs7093054
Chromosome Location	chr10:91053260-91053261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11203076	1.00[CEU][hapmap]
rs11203087	1.00[CEU][hapmap]
rs11203141	1.00[CEU][hapmap]
rs11813257	1.00[CEU][hapmap]
rs11816805	1.00[CEU][hapmap]
rs12257062	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1332334	1.00[CEU][hapmap]
rs1332338	1.00[CEU][hapmap]
rs17118228	1.00[CEU][hapmap]
rs17120040	1.00[CEU][hapmap]
rs17121936	1.00[CEU][hapmap]
rs7080667	1.00[CEU][hapmap]
rs7082073	1.00[CEU][hapmap]
rs7101353	1.00[CEU][hapmap]
rs7898580	1.00[CEU][hapmap]
rs7907230	1.00[CEU][hapmap]
rs7923948	1.00[CEU][hapmap]
rs9663530	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91044800-91055600	Weak transcription	Brain Angular Gyrus	brain
2	chr10:91044800-91055800	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:91045400-91055600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:91045600-91060800	Weak transcription	HSMM	muscle
5	chr10:91047800-91056000	Weak transcription	Esophagus	oesophagus
6	chr10:91050000-91055200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:91051400-91054800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:91051800-91054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:91051800-91055200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:91052200-91054400	Weak transcription	Primary B cells from cord blood	blood
11	chr10:91052400-91055400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:91052800-91061000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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