Variant report

Variant	rs11203141
Chromosome Location	chr10:91230996-91230997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10887966	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10887967	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10887968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11185731	1.00[EUR][1000 genomes]
rs11185734	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11185736	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11203076	1.00[CEU][hapmap]
rs11203087	1.00[CEU][hapmap]
rs11813257	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11816805	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12098435	1.00[EUR][1000 genomes]
rs12098668	1.00[EUR][1000 genomes]
rs12257062	1.00[CEU][hapmap]
rs12268958	0.93[YRI][hapmap];0.92[AFR][1000 genomes]
rs1332334	1.00[CEU][hapmap]
rs1332338	1.00[CEU][hapmap]
rs17120040	1.00[CEU][hapmap]
rs17121936	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs34407818	1.00[EUR][1000 genomes]
rs41284952	1.00[EUR][1000 genomes]
rs57529139	1.00[EUR][1000 genomes]
rs7077187	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7080667	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7082073	1.00[CEU][hapmap]
rs7093054	1.00[CEU][hapmap]
rs7101353	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73368509	1.00[EUR][1000 genomes]
rs73371311	1.00[EUR][1000 genomes]
rs7342121	1.00[EUR][1000 genomes]
rs74146910	1.00[EUR][1000 genomes]
rs7476546	1.00[EUR][1000 genomes]
rs7898580	1.00[CEU][hapmap]
rs7907230	1.00[CEU][hapmap]
rs7923948	1.00[CEU][hapmap]
rs9663530	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91224000-91234600	Weak transcription	Right Ventricle	heart
2	chr10:91224200-91236000	Weak transcription	Lung	lung
3	chr10:91226200-91231600	Enhancers	Fetal Lung	lung
4	chr10:91226800-91237800	Weak transcription	Stomach Mucosa	stomach
5	chr10:91227000-91234600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:91227000-91235200	Weak transcription	NH-A	brain
7	chr10:91227000-91237800	Weak transcription	Osteobl	bone
8	chr10:91228400-91235600	Enhancers	Liver	Liver
9	chr10:91228800-91231200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:91228800-91231200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr10:91228800-91231600	Enhancers	HMEC	breast
12	chr10:91229000-91231000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:91229000-91231400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:91229000-91231600	Enhancers	NHEK	skin
15	chr10:91229200-91231200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:91229200-91231600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr10:91229200-91231800	Enhancers	NHDF-Ad	bronchial
18	chr10:91229400-91231200	Enhancers	Fetal Heart	heart
19	chr10:91229400-91231800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:91229400-91236400	Weak transcription	Fetal Intestine Small	intestine
21	chr10:91230000-91231600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:91230000-91231600	Enhancers	HSMM	muscle
23	chr10:91230000-91231800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:91230200-91231600	Enhancers	HepG2	liver
25	chr10:91230600-91231400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr10:91230600-91235000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:91230600-91236200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:91230800-91231000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr10:91230800-91231200	Weak transcription	NHLF	lung
30	chr10:91230800-91231600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:91230800-91234000	Weak transcription	Left Ventricle	heart
32	chr10:91230800-91234600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:91230800-91234600	Weak transcription	Pancreas	Pancrea
34	chr10:91230800-91234600	Weak transcription	Right Atrium	heart
35	chr10:91230800-91236000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:91230800-91237800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links