Variant report

Variant	rs34407818
Chromosome Location	chr10:91099593-91099594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91087360..91089183-chr10:91097130..91099730,2	MCF-7	breast:
2	chr10:91098435..91101056-chr10:91103383..91106129,3	K562	blood:
3	chr10:91097289..91100504-chr10:91101597..91104556,3	K562	blood:

Variant related genes	Relation type
ENSG00000107798	Chromatin interaction
ENSG00000119917	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10887966	1.00[EUR][1000 genomes]
rs10887967	1.00[EUR][1000 genomes]
rs10887968	1.00[EUR][1000 genomes]
rs11185731	1.00[EUR][1000 genomes]
rs11185734	1.00[EUR][1000 genomes]
rs11185736	1.00[EUR][1000 genomes]
rs11203141	1.00[EUR][1000 genomes]
rs11813257	1.00[EUR][1000 genomes]
rs12098435	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12098668	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41284952	1.00[EUR][1000 genomes]
rs57529139	1.00[EUR][1000 genomes]
rs57947325	0.87[AFR][1000 genomes]
rs7077187	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077376	1.00[EUR][1000 genomes]
rs7080667	1.00[EUR][1000 genomes]
rs7101353	1.00[EUR][1000 genomes]
rs73368509	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73371311	1.00[EUR][1000 genomes]
rs7342121	1.00[EUR][1000 genomes]
rs74146910	1.00[EUR][1000 genomes]
rs7476546	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91088000-91099800	Weak transcription	Gastric	stomach
2	chr10:91090200-91107600	Weak transcription	Pancreas	Pancrea
3	chr10:91093400-91100200	Weak transcription	K562	blood
4	chr10:91093400-91100800	Weak transcription	Right Ventricle	heart
5	chr10:91093800-91106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:91093800-91106400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:91094000-91101000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:91094000-91102000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:91094000-91102200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:91094000-91103400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:91094000-91105400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:91094000-91110200	Weak transcription	Colonic Mucosa	Colon
13	chr10:91094000-91112000	Weak transcription	Esophagus	oesophagus
14	chr10:91094200-91101400	Weak transcription	Osteobl	bone
15	chr10:91094200-91102000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:91094200-91102000	Weak transcription	NHDF-Ad	bronchial
17	chr10:91094200-91103400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:91094200-91106800	Weak transcription	Fetal Kidney	kidney
19	chr10:91094200-91108400	Weak transcription	Stomach Mucosa	stomach
20	chr10:91094600-91100800	Weak transcription	Right Atrium	heart
21	chr10:91095200-91102000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:91095200-91110400	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:91095600-91105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:91096200-91100400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:91096200-91100400	Weak transcription	Thymus	Thymus
26	chr10:91096200-91100800	Strong transcription	Fetal Muscle Leg	muscle
27	chr10:91096200-91101200	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr10:91096400-91100200	Strong transcription	Liver	Liver
29	chr10:91096600-91101200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:91096600-91101200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:91096600-91101200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:91096600-91101200	Strong transcription	Fetal Muscle Trunk	muscle
33	chr10:91096600-91101400	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr10:91096800-91099600	Strong transcription	Fetal Intestine Large	intestine
35	chr10:91096800-91100200	Strong transcription	Fetal Stomach	stomach
36	chr10:91097200-91101200	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:91097400-91099600	Strong transcription	Primary hematopoietic stem cells	blood
38	chr10:91097400-91099800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:91097400-91100000	Strong transcription	Primary B cells from cord blood	blood
40	chr10:91097400-91100000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:91097400-91100000	Strong transcription	NHLF	lung
42	chr10:91097400-91100600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:91097400-91100800	Strong transcription	Fetal Lung	lung
44	chr10:91097400-91101200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:91097400-91101200	Strong transcription	Ovary	ovary
46	chr10:91097400-91105600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr10:91097600-91099800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:91097600-91100000	Strong transcription	Spleen	Spleen
49	chr10:91097600-91101000	Strong transcription	Lung	lung
50	chr10:91097600-91101800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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