Variant report

Variant	rs57529139
Chromosome Location	chr10:91113561-91113562
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91109558..91111434-chr10:91113140..91114686,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10887966	1.00[EUR][1000 genomes]
rs10887967	1.00[EUR][1000 genomes]
rs10887968	1.00[EUR][1000 genomes]
rs11185731	1.00[EUR][1000 genomes]
rs11185734	1.00[EUR][1000 genomes]
rs11185736	1.00[EUR][1000 genomes]
rs11203141	1.00[EUR][1000 genomes]
rs11813257	1.00[EUR][1000 genomes]
rs12098435	1.00[EUR][1000 genomes]
rs12098668	1.00[EUR][1000 genomes]
rs34407818	1.00[EUR][1000 genomes]
rs41284952	1.00[EUR][1000 genomes]
rs7077187	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7077376	1.00[EUR][1000 genomes]
rs7080667	1.00[EUR][1000 genomes]
rs7101353	1.00[EUR][1000 genomes]
rs73368509	1.00[EUR][1000 genomes]
rs73371311	1.00[EUR][1000 genomes]
rs7342121	1.00[EUR][1000 genomes]
rs74146910	1.00[EUR][1000 genomes]
rs7476546	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91108600-91122200	Weak transcription	Spleen	Spleen
2	chr10:91112200-91115400	Weak transcription	Brain Germinal Matrix	brain
3	chr10:91112200-91116800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:91112400-91114800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:91112400-91116000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:91112400-91116600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr10:91112400-91116800	Weak transcription	Fetal Stomach	stomach
8	chr10:91112400-91120000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:91112400-91122400	Weak transcription	Esophagus	oesophagus
10	chr10:91112400-91127400	Weak transcription	Left Ventricle	heart
11	chr10:91112600-91114200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:91113000-91115000	Weak transcription	HMEC	breast
13	chr10:91113000-91115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:91113000-91116000	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:91113000-91116600	Weak transcription	GM12878-XiMat	blood
16	chr10:91113000-91116800	Weak transcription	Fetal Kidney	kidney
17	chr10:91113000-91119200	Weak transcription	Lung	lung
18	chr10:91113200-91114600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:91113200-91114800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:91113200-91115000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:91113200-91115000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:91113200-91115400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:91113200-91115400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:91113200-91115400	Weak transcription	Fetal Lung	lung
25	chr10:91113200-91122200	Weak transcription	Placenta	Placenta
26	chr10:91113400-91114400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:91113400-91114600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:91113400-91114600	Weak transcription	NH-A	brain
29	chr10:91113400-91114800	Weak transcription	NHDF-Ad	bronchial
30	chr10:91113400-91114800	Weak transcription	NHLF	lung
31	chr10:91113400-91115000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:91113400-91115000	Weak transcription	Osteobl	bone
33	chr10:91113400-91116000	Weak transcription	K562	blood
34	chr10:91113400-91116800	Weak transcription	Fetal Heart	heart

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