Variant report

Variant	rs7342121
Chromosome Location	chr10:91191759-91191760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91186724..91190191-chr10:91191424..91194193,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFIT5-1	chr10:91190696-91191971	NONHSAT015512

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10887966	1.00[EUR][1000 genomes]
rs10887967	1.00[EUR][1000 genomes]
rs10887968	1.00[EUR][1000 genomes]
rs11185731	1.00[EUR][1000 genomes]
rs11185734	1.00[EUR][1000 genomes]
rs11185736	1.00[EUR][1000 genomes]
rs11203141	1.00[EUR][1000 genomes]
rs11813257	1.00[EUR][1000 genomes]
rs12098435	1.00[EUR][1000 genomes]
rs12098668	1.00[EUR][1000 genomes]
rs34407818	1.00[EUR][1000 genomes]
rs41284952	1.00[EUR][1000 genomes]
rs57529139	1.00[EUR][1000 genomes]
rs7077187	1.00[EUR][1000 genomes]
rs7080667	1.00[EUR][1000 genomes]
rs7101353	1.00[EUR][1000 genomes]
rs73368509	1.00[EUR][1000 genomes]
rs73371311	1.00[EUR][1000 genomes]
rs74146910	1.00[EUR][1000 genomes]
rs7476546	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91175600-91191800	Weak transcription	Psoas Muscle	Psoas
2	chr10:91175600-91191800	Weak transcription	Hela-S3	cervix
3	chr10:91178200-91191800	Weak transcription	Aorta	Aorta
4	chr10:91178200-91197600	Weak transcription	Pancreas	Pancrea
5	chr10:91179600-91225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:91181200-91192800	Weak transcription	Left Ventricle	heart
7	chr10:91187800-91192400	Weak transcription	HUVEC	blood vessel
8	chr10:91188200-91191800	Weak transcription	Right Ventricle	heart
9	chr10:91188400-91191800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:91188600-91194400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:91188800-91191800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:91189000-91191800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr10:91189000-91194000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:91189000-91194400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:91189200-91192800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:91189800-91194400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:91191200-91192400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:91191200-91192400	Enhancers	HSMM	muscle
19	chr10:91191200-91192400	Enhancers	NHEK	skin
20	chr10:91191200-91192600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:91191200-91193600	Enhancers	Fetal Heart	heart
22	chr10:91191400-91192000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr10:91191400-91192000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:91191400-91192000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:91191400-91192200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:91191400-91192200	Enhancers	HMEC	breast
27	chr10:91191400-91192600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:91191400-91192600	Enhancers	Placenta Amnion	Placenta Amnion
29	chr10:91191400-91192600	Enhancers	NH-A	brain
30	chr10:91191600-91192000	Enhancers	Osteobl	bone
31	chr10:91191600-91192200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr10:91191600-91192200	Enhancers	A549	lung
33	chr10:91191600-91192600	Enhancers	HSMMtube	muscle

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