Variant report

Variant	rs73368509
Chromosome Location	chr10:91086209-91086210
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10887966	1.00[EUR][1000 genomes]
rs10887967	1.00[EUR][1000 genomes]
rs10887968	1.00[EUR][1000 genomes]
rs11185731	1.00[EUR][1000 genomes]
rs11185734	1.00[EUR][1000 genomes]
rs11185736	1.00[EUR][1000 genomes]
rs11203141	1.00[EUR][1000 genomes]
rs11813257	1.00[EUR][1000 genomes]
rs12098435	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12098668	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34407818	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41284952	1.00[EUR][1000 genomes]
rs57529139	1.00[EUR][1000 genomes]
rs57947325	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7077187	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7077376	1.00[EUR][1000 genomes]
rs7080667	1.00[EUR][1000 genomes]
rs7101353	1.00[EUR][1000 genomes]
rs73371311	1.00[EUR][1000 genomes]
rs7342121	1.00[EUR][1000 genomes]
rs74146910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7476546	1.00[EUR][1000 genomes]
rs7922613	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91064200-91086600	Weak transcription	Hela-S3	cervix
2	chr10:91082600-91086400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:91083800-91087000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:91084400-91086600	Weak transcription	Right Atrium	heart
5	chr10:91085400-91087200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr10:91085600-91087400	Enhancers	Brain Hippocampus Middle	brain
7	chr10:91085800-91087000	Enhancers	Brain Substantia Nigra	brain
8	chr10:91085800-91087200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:91085800-91087200	Enhancers	NHLF	lung
10	chr10:91085800-91087400	Weak transcription	Fetal Heart	heart
11	chr10:91086000-91086400	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:91086000-91086800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:91086000-91086800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:91086000-91086800	Enhancers	Brain Angular Gyrus	brain
15	chr10:91086000-91087000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:91086000-91087000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:91086000-91087000	Enhancers	NHDF-Ad	bronchial
18	chr10:91086000-91087200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:91086000-91087200	Enhancers	Osteobl	bone
20	chr10:91086200-91087000	Weak transcription	Fetal Lung	lung
21	chr10:91086200-91087200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:91086200-91087200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:91086200-91087400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:91086200-91087400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:91086200-91087600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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