Variant report

Variant	rs74146910
Chromosome Location	chr10:91063095-91063096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91062013..91063553-chr10:91066709..91068779,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10887966	1.00[EUR][1000 genomes]
rs10887967	1.00[EUR][1000 genomes]
rs10887968	1.00[EUR][1000 genomes]
rs11185731	1.00[EUR][1000 genomes]
rs11185734	1.00[EUR][1000 genomes]
rs11185736	1.00[EUR][1000 genomes]
rs11203141	1.00[EUR][1000 genomes]
rs11813257	1.00[EUR][1000 genomes]
rs12098435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12098668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34407818	1.00[EUR][1000 genomes]
rs41284952	1.00[EUR][1000 genomes]
rs57529139	1.00[EUR][1000 genomes]
rs57947325	1.00[AMR][1000 genomes]
rs7077187	1.00[EUR][1000 genomes]
rs7077376	1.00[EUR][1000 genomes]
rs7080667	1.00[EUR][1000 genomes]
rs7101353	1.00[EUR][1000 genomes]
rs73368509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73371311	1.00[EUR][1000 genomes]
rs7342121	1.00[EUR][1000 genomes]
rs7476546	1.00[EUR][1000 genomes]
rs7922613	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91055800-91070000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:91056200-91065800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:91060800-91064200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr10:91061000-91063200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr10:91061000-91063200	Active TSS	Thymus	Thymus
6	chr10:91061000-91063200	Flanking Active TSS	Osteobl	bone
7	chr10:91061000-91063800	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr10:91061000-91064000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr10:91061000-91064000	Flanking Active TSS	Hela-S3	cervix
10	chr10:91061200-91063200	Active TSS	Aorta	Aorta
11	chr10:91061200-91063200	Active TSS	Brain Anterior Caudate	brain
12	chr10:91061200-91063200	Active TSS	Brain Hippocampus Middle	brain
13	chr10:91061200-91063400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:91061200-91063600	Active TSS	Left Ventricle	heart
15	chr10:91061200-91063600	Active TSS	Right Atrium	heart
16	chr10:91061400-91063200	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr10:91061400-91063600	Active TSS	Stomach Smooth Muscle	stomach
18	chr10:91061600-91063200	Active TSS	NHLF	lung
19	chr10:91061800-91063400	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr10:91061800-91063800	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr10:91061800-91063800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:91061800-91063800	Flanking Active TSS	Dnd41	blood
23	chr10:91061800-91064000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr10:91061800-91064000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:91061800-91064200	Flanking Active TSS	Fetal Muscle Leg	muscle
26	chr10:91062000-91063200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:91062000-91063200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr10:91062000-91063200	Enhancers	Fetal Heart	heart
29	chr10:91062000-91063200	Flanking Active TSS	NHEK	skin
30	chr10:91062000-91063400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr10:91062000-91064000	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr10:91062000-91064000	Flanking Active TSS	Liver	Liver
33	chr10:91062200-91063400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
34	chr10:91062200-91063400	Weak transcription	Lung	lung
35	chr10:91062200-91063800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:91062200-91065600	Weak transcription	Fetal Brain Male	brain
37	chr10:91062200-91065800	Weak transcription	Gastric	stomach
38	chr10:91062400-91063200	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr10:91062400-91063200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr10:91062400-91063200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr10:91062400-91063200	Enhancers	Fetal Intestine Large	intestine
42	chr10:91062400-91063200	Enhancers	Fetal Intestine Small	intestine
43	chr10:91062400-91063400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr10:91062400-91063600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:91062400-91063600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:91062400-91063800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:91062400-91064000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr10:91062400-91064000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr10:91062400-91064200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr10:91062600-91063200	Enhancers	Muscle Satellite Cultured Cells	--

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