Variant report

Variant	rs41284952
Chromosome Location	chr10:91178740-91178741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10887966	1.00[EUR][1000 genomes]
rs10887967	1.00[EUR][1000 genomes]
rs10887968	1.00[EUR][1000 genomes]
rs11185731	1.00[EUR][1000 genomes]
rs11185734	1.00[EUR][1000 genomes]
rs11185736	1.00[EUR][1000 genomes]
rs11203141	1.00[EUR][1000 genomes]
rs11813257	1.00[EUR][1000 genomes]
rs12098435	1.00[EUR][1000 genomes]
rs12098668	1.00[EUR][1000 genomes]
rs34407818	1.00[EUR][1000 genomes]
rs57529139	1.00[EUR][1000 genomes]
rs7077187	1.00[EUR][1000 genomes]
rs7080667	1.00[EUR][1000 genomes]
rs7101353	1.00[EUR][1000 genomes]
rs73368509	1.00[EUR][1000 genomes]
rs73371311	1.00[EUR][1000 genomes]
rs7342121	1.00[EUR][1000 genomes]
rs74146910	1.00[EUR][1000 genomes]
rs7476546	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91175400-91178800	Weak transcription	Gastric	stomach
2	chr10:91175400-91180200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:91175400-91187600	Weak transcription	HUVEC	blood vessel
4	chr10:91175600-91179600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:91175600-91181200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr10:91175600-91181200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:91175600-91183800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:91175600-91188200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:91175600-91191800	Weak transcription	Psoas Muscle	Psoas
10	chr10:91175600-91191800	Weak transcription	Hela-S3	cervix
11	chr10:91175800-91179600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:91175800-91182600	Weak transcription	Thymus	Thymus
13	chr10:91176000-91179600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr10:91176000-91180000	Weak transcription	Colonic Mucosa	Colon
15	chr10:91176200-91179000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:91176200-91186400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:91176600-91179400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:91176600-91182800	Weak transcription	Esophagus	oesophagus
19	chr10:91177000-91178800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:91177000-91179200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
21	chr10:91177000-91181400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:91177200-91178800	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr10:91177200-91181600	Strong transcription	Fetal Intestine Large	intestine
24	chr10:91177200-91181800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:91177400-91179800	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr10:91177400-91182000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:91177600-91179200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr10:91177600-91184000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:91177800-91179400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr10:91178000-91179400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr10:91178000-91179400	Enhancers	Brain Substantia Nigra	brain
32	chr10:91178000-91183600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:91178000-91186000	Weak transcription	HMEC	breast
34	chr10:91178000-91186200	Weak transcription	HSMMtube	muscle
35	chr10:91178000-91186400	Weak transcription	Fetal Stomach	stomach
36	chr10:91178000-91187800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:91178200-91178800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:91178200-91178800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:91178200-91178800	Active TSS	Brain Germinal Matrix	brain
40	chr10:91178200-91179200	Weak transcription	Liver	Liver
41	chr10:91178200-91179400	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr10:91178200-91179400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:91178200-91179600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:91178200-91179600	Enhancers	Brain Cingulate Gyrus	brain
45	chr10:91178200-91179800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:91178200-91180200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr10:91178200-91180200	Weak transcription	Placenta	Placenta
48	chr10:91178200-91180200	Weak transcription	NHEK	skin
49	chr10:91178200-91180600	Weak transcription	Fetal Heart	heart
50	chr10:91178200-91182200	Weak transcription	Rectal Mucosa Donor 31	rectum

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