Variant report

Variant	rs1332338
Chromosome Location	chr10:91142207-91142208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11185734	1.00[CEU][hapmap]
rs11185736	1.00[CEU][hapmap]
rs11203076	1.00[CEU][hapmap]
rs11203087	1.00[CEU][hapmap]
rs11203141	1.00[CEU][hapmap]
rs11813257	1.00[CEU][hapmap]
rs11816805	1.00[CEU][hapmap]
rs12257062	1.00[CEU][hapmap]
rs1332334	1.00[CEU][hapmap]
rs17118228	1.00[CEU][hapmap]
rs17120040	1.00[CEU][hapmap]
rs17121282	1.00[EUR][1000 genomes]
rs17121936	1.00[CEU][hapmap]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	1.00[EUR][1000 genomes]
rs58250701	1.00[EUR][1000 genomes]
rs58761256	1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[EUR][1000 genomes]
rs60411920	1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7080667	1.00[CEU][hapmap]
rs7082073	1.00[CEU][hapmap]
rs7093054	1.00[CEU][hapmap]
rs7101353	1.00[CEU][hapmap]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	1.00[EUR][1000 genomes]
rs73367489	1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73369777	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7898580	1.00[CEU][hapmap]
rs7907230	1.00[CEU][hapmap]
rs7920187	1.00[EUR][1000 genomes]
rs7920492	1.00[EUR][1000 genomes]
rs7923948	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7924077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9663530	1.00[CEU][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91134800-91142600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:91135000-91150200	Weak transcription	Fetal Brain Male	brain
3	chr10:91141000-91150000	Weak transcription	Fetal Heart	heart

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