Variant report

Variant	rs58250701
Chromosome Location	chr10:91183285-91183286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1332338	1.00[EUR][1000 genomes]
rs17121282	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	1.00[EUR][1000 genomes]
rs58761256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[EUR][1000 genomes]
rs60411920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	1.00[EUR][1000 genomes]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367489	1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	1.00[EUR][1000 genomes]
rs73369738	1.00[EUR][1000 genomes]
rs73369750	1.00[EUR][1000 genomes]
rs73369762	1.00[EUR][1000 genomes]
rs73369777	1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7920187	1.00[EUR][1000 genomes]
rs7920492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7923948	1.00[EUR][1000 genomes]
rs7924077	1.00[EUR][1000 genomes]
rs9663530	1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91175400-91187600	Weak transcription	HUVEC	blood vessel
2	chr10:91175600-91183800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:91175600-91188200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:91175600-91191800	Weak transcription	Psoas Muscle	Psoas
5	chr10:91175600-91191800	Weak transcription	Hela-S3	cervix
6	chr10:91176200-91186400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:91177600-91184000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:91178000-91183600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:91178000-91186000	Weak transcription	HMEC	breast
10	chr10:91178000-91186200	Weak transcription	HSMMtube	muscle
11	chr10:91178000-91186400	Weak transcription	Fetal Stomach	stomach
12	chr10:91178000-91187800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:91178200-91183800	Weak transcription	HepG2	liver
14	chr10:91178200-91184800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:91178200-91186400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:91178200-91191800	Weak transcription	Aorta	Aorta
17	chr10:91178200-91197600	Weak transcription	Pancreas	Pancrea
18	chr10:91178400-91183800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:91178400-91184800	Weak transcription	Lung	lung
20	chr10:91178400-91185600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr10:91178400-91186200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:91178400-91186200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:91178400-91186200	Weak transcription	NHLF	lung
24	chr10:91178400-91186200	Weak transcription	Osteobl	bone
25	chr10:91178400-91187200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:91178400-91188000	Weak transcription	Right Ventricle	heart
27	chr10:91178400-91191600	Weak transcription	A549	lung
28	chr10:91178600-91186200	Weak transcription	NH-A	brain
29	chr10:91178800-91186200	Weak transcription	NHDF-Ad	bronchial
30	chr10:91178800-91186400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:91179000-91186200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:91179400-91183600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:91179400-91184200	Weak transcription	Fetal Kidney	kidney
34	chr10:91179400-91186400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:91179400-91187600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:91179400-91187800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr10:91179400-91187800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr10:91179400-91187800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:91179600-91183600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:91179600-91183800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:91179600-91184600	Weak transcription	Fetal Intestine Small	intestine
42	chr10:91179600-91225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:91181200-91183600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr10:91181200-91185600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr10:91181200-91192800	Weak transcription	Left Ventricle	heart
46	chr10:91181400-91184400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:91181400-91186000	Weak transcription	Fetal Heart	heart
48	chr10:91181400-91186200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:91181400-91186200	Weak transcription	NHEK	skin
50	chr10:91181600-91183400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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