Variant report

Variant	rs7920492
Chromosome Location	chr10:91190068-91190069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91189486..91191053-chr10:91193150..91195788,2	MCF-7	breast:
2	chr10:91172746..91174828-chr10:91189543..91191211,2	K562	blood:
3	chr10:91186724..91190191-chr10:91191424..91194193,3	K562	blood:

Variant related genes	Relation type
ENSG00000152778	Chromatin interaction
ENSG00000107798	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1332338	1.00[EUR][1000 genomes]
rs17121282	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17122436	1.00[EUR][1000 genomes]
rs56787241	1.00[EUR][1000 genomes]
rs58250701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58761256	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59685794	1.00[EUR][1000 genomes]
rs60065434	1.00[EUR][1000 genomes]
rs60411920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60918860	1.00[EUR][1000 genomes]
rs7074302	1.00[EUR][1000 genomes]
rs73359643	1.00[EUR][1000 genomes]
rs73363507	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73367489	1.00[EUR][1000 genomes]
rs73369718	1.00[EUR][1000 genomes]
rs73369727	1.00[EUR][1000 genomes]
rs73369738	1.00[EUR][1000 genomes]
rs73369750	1.00[EUR][1000 genomes]
rs73369762	1.00[EUR][1000 genomes]
rs73369777	1.00[EUR][1000 genomes]
rs74146908	1.00[EUR][1000 genomes]
rs7920187	1.00[EUR][1000 genomes]
rs7923948	1.00[EUR][1000 genomes]
rs7924077	1.00[EUR][1000 genomes]
rs9663530	1.00[EUR][1000 genomes]
rs9943338	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91175600-91191800	Weak transcription	Psoas Muscle	Psoas
2	chr10:91175600-91191800	Weak transcription	Hela-S3	cervix
3	chr10:91178200-91191800	Weak transcription	Aorta	Aorta
4	chr10:91178200-91197600	Weak transcription	Pancreas	Pancrea
5	chr10:91178400-91191600	Weak transcription	A549	lung
6	chr10:91179600-91225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:91181200-91192800	Weak transcription	Left Ventricle	heart
8	chr10:91182200-91191200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:91182200-91191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:91187800-91192400	Weak transcription	HUVEC	blood vessel
11	chr10:91188200-91191800	Weak transcription	Right Ventricle	heart
12	chr10:91188400-91191400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:91188400-91191400	Weak transcription	NH-A	brain
14	chr10:91188400-91191600	Weak transcription	Osteobl	bone
15	chr10:91188400-91191800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:91188600-91194400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:91188800-91191200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:91188800-91191800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:91189000-91191200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:91189000-91191200	Weak transcription	NHEK	skin
21	chr10:91189000-91191400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:91189000-91191400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:91189000-91191400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:91189000-91191400	Weak transcription	HMEC	breast
25	chr10:91189000-91191800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:91189000-91194000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:91189000-91194400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:91189200-91191600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:91189200-91191600	Weak transcription	HSMMtube	muscle
30	chr10:91189200-91192800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:91189400-91191200	Weak transcription	HSMM	muscle
32	chr10:91189600-91191200	Weak transcription	Fetal Heart	heart
33	chr10:91189800-91194400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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