Variant report

Variant	rs7910817
Chromosome Location	chr10:91062135-91062136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91062013..91063553-chr10:91066709..91068779,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10159717	0.87[AFR][1000 genomes]
rs11203056	0.87[EUR][1000 genomes]
rs11203082	0.83[AFR][1000 genomes]
rs11203083	0.83[AFR][1000 genomes]
rs11203091	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11203100	0.85[YRI][hapmap]
rs11499023	0.89[EUR][1000 genomes]
rs12242873	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12243051	0.87[AFR][1000 genomes]
rs12245646	1.00[ASW][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12245731	0.89[EUR][1000 genomes]
rs12251678	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12252455	0.80[AFR][1000 genomes]
rs12255221	0.83[AFR][1000 genomes]
rs12256540	1.00[YRI][hapmap]
rs12259825	0.83[AFR][1000 genomes]
rs12259887	0.83[AFR][1000 genomes]
rs12262813	1.00[EUR][1000 genomes]
rs12263019	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1332334	1.00[TSI][hapmap]
rs7907230	1.00[TSI][hapmap]
rs7910157	1.00[TSI][hapmap]
rs7912070	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7922439	0.87[EUR][1000 genomes]
rs7922613	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91055800-91070000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:91056200-91065800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:91060800-91064200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr10:91061000-91062200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr10:91061000-91062200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:91061000-91062200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:91061000-91062200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr10:91061000-91062200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:91061000-91062400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:91061000-91062400	Active TSS	Fetal Muscle Trunk	muscle
11	chr10:91061000-91062600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:91061000-91062800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:91061000-91062800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:91061000-91062800	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr10:91061000-91063200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr10:91061000-91063200	Active TSS	Thymus	Thymus
17	chr10:91061000-91063200	Flanking Active TSS	Osteobl	bone
18	chr10:91061000-91063800	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr10:91061000-91064000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr10:91061000-91064000	Flanking Active TSS	Hela-S3	cervix
21	chr10:91061200-91062200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:91061200-91062200	Active TSS	K562	blood
23	chr10:91061200-91062400	Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr10:91061200-91062400	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr10:91061200-91062600	Enhancers	H1 Cell Line	embryonic stem cell
26	chr10:91061200-91063000	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr10:91061200-91063000	Active TSS	Colonic Mucosa	Colon
28	chr10:91061200-91063000	Active TSS	Ovary	ovary
29	chr10:91061200-91063000	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr10:91061200-91063200	Active TSS	Aorta	Aorta
31	chr10:91061200-91063200	Active TSS	Brain Anterior Caudate	brain
32	chr10:91061200-91063200	Active TSS	Brain Hippocampus Middle	brain
33	chr10:91061200-91063400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:91061200-91063600	Active TSS	Left Ventricle	heart
35	chr10:91061200-91063600	Active TSS	Right Atrium	heart
36	chr10:91061400-91062200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:91061400-91062200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr10:91061400-91062200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:91061400-91062200	Active TSS	Colon Smooth Muscle	Colon
40	chr10:91061400-91062200	ZNF genes & repeats	Fetal Brain Male	brain
41	chr10:91061400-91062200	Active TSS	Pancreas	Pancrea
42	chr10:91061400-91062200	Active TSS	Rectal Smooth Muscle	rectum
43	chr10:91061400-91062400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:91061400-91062400	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr10:91061400-91062400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:91061400-91062400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:91061400-91062400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr10:91061400-91062400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr10:91061400-91062400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:91061400-91062400	Active TSS	Fetal Kidney	kidney

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