Variant report

Variant	rs12262813
Chromosome Location	chr10:91037605-91037606
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91035256..91038390-chr10:91040352..91044173,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CH25H-2	chr10:91037423-91038260	NONHSAT015503

Variant related genes	Relation type
ENSG00000232110	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11203056	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11499023	0.89[EUR][1000 genomes]
rs12242873	0.87[EUR][1000 genomes]
rs12245731	0.89[EUR][1000 genomes]
rs7910817	1.00[EUR][1000 genomes]
rs7912070	0.87[EUR][1000 genomes]
rs7922439	0.87[EUR][1000 genomes]
rs7922613	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91034200-91039200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr10:91034400-91039800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:91034400-91043400	Enhancers	NHDF-Ad	bronchial
4	chr10:91034600-91037800	Weak transcription	Fetal Brain Male	brain
5	chr10:91034800-91039800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:91035200-91037800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:91035400-91037800	Weak transcription	Left Ventricle	heart
8	chr10:91035400-91039200	Weak transcription	Esophagus	oesophagus
9	chr10:91035800-91037800	Enhancers	NHEK	skin
10	chr10:91036000-91037800	Weak transcription	Psoas Muscle	Psoas
11	chr10:91036000-91037800	Weak transcription	Right Atrium	heart
12	chr10:91036800-91039200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:91036800-91043200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:91036800-91043200	Enhancers	NHLF	lung
15	chr10:91037000-91039400	Enhancers	Fetal Stomach	stomach
16	chr10:91037200-91037800	Enhancers	Osteobl	bone
17	chr10:91037200-91038400	Flanking Active TSS	A549	lung
18	chr10:91037200-91039400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:91037200-91039600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr10:91037200-91039800	Enhancers	Brain Angular Gyrus	brain
21	chr10:91037200-91039800	Enhancers	Brain Substantia Nigra	brain
22	chr10:91037200-91040400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:91037400-91037800	Enhancers	Brain Hippocampus Middle	brain
24	chr10:91037400-91037800	Enhancers	NH-A	brain
25	chr10:91037400-91038000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:91037400-91038000	Enhancers	Brain Cingulate Gyrus	brain
27	chr10:91037400-91038400	Enhancers	Ovary	ovary
28	chr10:91037400-91038600	Enhancers	Rectal Smooth Muscle	rectum
29	chr10:91037400-91039200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:91037400-91039200	Enhancers	Fetal Intestine Small	intestine
31	chr10:91037400-91039200	Enhancers	HepG2	liver
32	chr10:91037400-91039600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:91037400-91039600	Enhancers	Brain Anterior Caudate	brain
34	chr10:91037400-91039800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:91037400-91039800	Enhancers	HMEC	breast
36	chr10:91037400-91039800	Enhancers	HSMM	muscle
37	chr10:91037400-91040400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:91037400-91040400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:91037400-91041200	Enhancers	Fetal Heart	heart
40	chr10:91037600-91037800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:91037600-91037800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:91037600-91037800	Enhancers	Stomach Smooth Muscle	stomach
43	chr10:91037600-91037800	Flanking Active TSS	HUVEC	blood vessel
44	chr10:91037600-91038000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:91037600-91038000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:91037600-91038000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:91037600-91038000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr10:91037600-91038000	Active TSS	Aorta	Aorta
49	chr10:91037600-91038000	Enhancers	Fetal Lung	lung
50	chr10:91037600-91038000	Flanking Active TSS	Hela-S3	cervix

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