Variant report

Variant	rs7912070
Chromosome Location	chr10:91071952-91071953
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10159717	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11203082	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11203083	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11203088	1.00[YRI][hapmap]
rs11203091	1.00[YRI][hapmap]
rs11203093	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11203095	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11203100	1.00[YRI][hapmap]
rs12242873	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12243051	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12243721	1.00[AMR][1000 genomes]
rs12243856	1.00[AMR][1000 genomes]
rs12245646	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12250550	1.00[AMR][1000 genomes]
rs12250610	1.00[AMR][1000 genomes]
rs12251678	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12255221	0.88[AFR][1000 genomes]
rs12256540	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12259825	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259887	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12262813	0.87[EUR][1000 genomes]
rs12263019	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263584	1.00[AMR][1000 genomes]
rs12269110	1.00[AMR][1000 genomes]
rs7910817	1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7922439	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91063200-91074600	Weak transcription	Fetal Intestine Small	intestine
2	chr10:91063200-91076000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:91063400-91072600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:91063800-91074200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:91064000-91072800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:91064200-91086600	Weak transcription	Hela-S3	cervix
7	chr10:91066400-91074200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:91066600-91073200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:91066600-91074200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:91066600-91074600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:91066600-91075400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:91066800-91072000	Weak transcription	Lung	lung
13	chr10:91066800-91073400	Weak transcription	Brain Substantia Nigra	brain
14	chr10:91067000-91074000	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:91067000-91074400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:91067200-91073400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:91067200-91076000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:91067400-91072800	Weak transcription	Fetal Brain Male	brain
19	chr10:91067600-91076000	Weak transcription	Brain Anterior Caudate	brain
20	chr10:91067800-91073000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr10:91067800-91074200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:91067800-91074600	Weak transcription	Fetal Lung	lung
23	chr10:91069000-91074000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:91069000-91074200	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:91069200-91074200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:91069400-91074200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:91069400-91076600	Weak transcription	Left Ventricle	heart

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