Variant report

Variant	rs7910157
Chromosome Location	chr10:91135182-91135183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr10:91135156-91135492	HepG2	liver:	n/a	n/a
2	FOXA1	chr10:91135125-91135479	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
IFIT1B	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10159717	0.83[EUR][1000 genomes]
rs11203082	0.83[EUR][1000 genomes]
rs11203083	0.83[EUR][1000 genomes]
rs11203087	0.83[EUR][1000 genomes]
rs11203089	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11203091	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs11203093	1.00[EUR][1000 genomes]
rs11203095	1.00[EUR][1000 genomes]
rs12243051	1.00[EUR][1000 genomes]
rs12243721	1.00[EUR][1000 genomes]
rs12243856	1.00[EUR][1000 genomes]
rs12245646	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12250550	1.00[EUR][1000 genomes]
rs12250610	1.00[EUR][1000 genomes]
rs12251678	1.00[EUR][1000 genomes]
rs12256540	1.00[EUR][1000 genomes]
rs12259825	1.00[EUR][1000 genomes]
rs12259887	1.00[EUR][1000 genomes]
rs12263019	1.00[EUR][1000 genomes]
rs12263584	1.00[EUR][1000 genomes]
rs12267215	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12268333	0.83[EUR][1000 genomes]
rs12269110	1.00[EUR][1000 genomes]
rs1332334	1.00[TSI][hapmap]
rs59633641	1.00[EUR][1000 genomes]
rs6586191	0.87[LWK][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7074809	1.00[EUR][1000 genomes]
rs7079179	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7090951	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907230	1.00[TSI][hapmap]
rs7910817	1.00[TSI][hapmap]
rs7913002	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs7919999	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91129400-91138000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:91130600-91135800	Enhancers	Liver	Liver
3	chr10:91130800-91135800	Enhancers	Fetal Heart	heart
4	chr10:91131000-91135400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:91131200-91135200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:91133000-91135200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:91133000-91135400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:91133000-91135400	Enhancers	Fetal Intestine Small	intestine
9	chr10:91133200-91135200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr10:91133200-91135200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:91133200-91135200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:91133200-91135200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr10:91133200-91135200	Enhancers	Fetal Muscle Leg	muscle
14	chr10:91133200-91135200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr10:91133200-91135200	Enhancers	NHDF-Ad	bronchial
16	chr10:91133200-91135200	Enhancers	NHLF	lung
17	chr10:91133200-91135400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:91133200-91135400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:91133200-91135600	Enhancers	Fetal Intestine Large	intestine
20	chr10:91133200-91135800	Enhancers	Brain Substantia Nigra	brain
21	chr10:91133400-91135200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:91133800-91135200	Enhancers	Aorta	Aorta
23	chr10:91133800-91135800	Enhancers	Pancreas	Pancrea
24	chr10:91134000-91135200	Enhancers	Spleen	Spleen
25	chr10:91134200-91135200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:91134200-91135200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:91134200-91135200	Enhancers	Adipose Nuclei	Adipose
28	chr10:91134200-91135200	Enhancers	Ovary	ovary
29	chr10:91134200-91135200	Enhancers	NH-A	brain
30	chr10:91134200-91135400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr10:91134200-91138000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:91134400-91135200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr10:91134400-91135600	Enhancers	HepG2	liver
34	chr10:91134800-91135200	Enhancers	K562	blood
35	chr10:91134800-91135600	Enhancers	Brain Hippocampus Middle	brain
36	chr10:91134800-91135600	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr10:91134800-91135800	Enhancers	Brain Cingulate Gyrus	brain
38	chr10:91134800-91142600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:91135000-91135200	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr10:91135000-91135400	Enhancers	Brain Anterior Caudate	brain
41	chr10:91135000-91135600	Enhancers	Brain Angular Gyrus	brain
42	chr10:91135000-91135800	Enhancers	Fetal Lung	lung
43	chr10:91135000-91150200	Weak transcription	Fetal Brain Male	brain

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