Variant report

Variant	rs7079179
Chromosome Location	chr10:91132490-91132491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10159717	0.83[EUR][1000 genomes]
rs11203082	0.83[EUR][1000 genomes]
rs11203083	0.83[EUR][1000 genomes]
rs11203087	0.83[EUR][1000 genomes]
rs11203089	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11203091	0.83[EUR][1000 genomes]
rs11203093	1.00[EUR][1000 genomes]
rs11203095	1.00[EUR][1000 genomes]
rs12243051	1.00[EUR][1000 genomes]
rs12243721	1.00[EUR][1000 genomes]
rs12243856	1.00[EUR][1000 genomes]
rs12245646	1.00[EUR][1000 genomes]
rs12250550	1.00[EUR][1000 genomes]
rs12250610	1.00[EUR][1000 genomes]
rs12251678	1.00[EUR][1000 genomes]
rs12256540	1.00[EUR][1000 genomes]
rs12259825	1.00[EUR][1000 genomes]
rs12259887	1.00[EUR][1000 genomes]
rs12263019	1.00[EUR][1000 genomes]
rs12263584	1.00[EUR][1000 genomes]
rs12267215	0.83[EUR][1000 genomes]
rs12268333	0.83[EUR][1000 genomes]
rs12269110	1.00[EUR][1000 genomes]
rs59633641	1.00[EUR][1000 genomes]
rs6586191	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7074809	1.00[EUR][1000 genomes]
rs7090951	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913002	0.80[AFR][1000 genomes]
rs7919999	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91119600-91133800	Weak transcription	Pancreas	Pancrea
2	chr10:91127800-91133400	Weak transcription	Fetal Kidney	kidney
3	chr10:91127800-91134200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:91128200-91133200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:91128200-91133800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:91128200-91133800	Weak transcription	Small Intestine	intestine
7	chr10:91129200-91133200	Weak transcription	Ovary	ovary
8	chr10:91129200-91133200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:91129200-91133200	Weak transcription	NHLF	lung
10	chr10:91129200-91133800	Weak transcription	Aorta	Aorta
11	chr10:91129200-91133800	Weak transcription	Psoas Muscle	Psoas
12	chr10:91129200-91134400	Weak transcription	Lung	lung
13	chr10:91129400-91133000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:91129400-91133000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:91129400-91133000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:91129400-91133200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:91129400-91133200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:91129400-91133200	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:91129400-91133200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:91129400-91133200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:91129400-91133200	Weak transcription	Fetal Stomach	stomach
22	chr10:91129400-91133200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:91129400-91133200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr10:91129400-91133200	Weak transcription	HSMM	muscle
25	chr10:91129400-91133200	Weak transcription	NHDF-Ad	bronchial
26	chr10:91129400-91133400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:91129400-91133600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr10:91129400-91133800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:91129400-91133800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:91129400-91133800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr10:91129400-91134400	Weak transcription	Left Ventricle	heart
32	chr10:91129400-91138000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:91129600-91133200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:91129600-91133200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:91129600-91133200	Weak transcription	Brain Anterior Caudate	brain
36	chr10:91129600-91133200	Weak transcription	Osteobl	bone
37	chr10:91129800-91133000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:91129800-91133000	Weak transcription	Fetal Intestine Small	intestine
39	chr10:91129800-91133200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:91129800-91133200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:91129800-91133200	Weak transcription	Brain Angular Gyrus	brain
42	chr10:91129800-91133200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:91129800-91133200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:91129800-91133200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr10:91129800-91133200	Weak transcription	Brain Substantia Nigra	brain
46	chr10:91129800-91133400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:91129800-91134200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:91129800-91134200	Weak transcription	Placenta	Placenta
49	chr10:91130000-91133200	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:91130600-91134800	Enhancers	Primary hematopoietic stem cells	blood

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