Variant report

Variant	rs59633641
Chromosome Location	chr10:91177029-91177030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:91176960-91177146	K562	blood:	n/a	n/a

Variant related genes	Relation type
LIPA	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10159717	0.83[EUR][1000 genomes]
rs11203082	0.83[EUR][1000 genomes]
rs11203083	0.83[EUR][1000 genomes]
rs11203087	0.83[EUR][1000 genomes]
rs11203091	0.83[EUR][1000 genomes]
rs11203093	1.00[EUR][1000 genomes]
rs11203095	1.00[EUR][1000 genomes]
rs12243051	1.00[EUR][1000 genomes]
rs12243721	1.00[EUR][1000 genomes]
rs12243856	1.00[EUR][1000 genomes]
rs12245646	1.00[EUR][1000 genomes]
rs12250550	1.00[EUR][1000 genomes]
rs12250610	1.00[EUR][1000 genomes]
rs12251678	1.00[EUR][1000 genomes]
rs12256540	1.00[EUR][1000 genomes]
rs12259825	1.00[EUR][1000 genomes]
rs12259887	1.00[EUR][1000 genomes]
rs12263019	1.00[EUR][1000 genomes]
rs12263584	1.00[EUR][1000 genomes]
rs12267215	0.83[EUR][1000 genomes]
rs12268333	0.83[EUR][1000 genomes]
rs12269110	1.00[EUR][1000 genomes]
rs7074809	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7079179	1.00[EUR][1000 genomes]
rs7090951	1.00[EUR][1000 genomes]
rs7910157	1.00[EUR][1000 genomes]
rs7919999	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91175400-91177800	Enhancers	Pancreas	Pancrea
2	chr10:91175400-91178800	Weak transcription	Gastric	stomach
3	chr10:91175400-91180200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:91175400-91187600	Weak transcription	HUVEC	blood vessel
5	chr10:91175600-91177200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:91175600-91177200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:91175600-91177200	Weak transcription	Aorta	Aorta
8	chr10:91175600-91177200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:91175600-91177200	Weak transcription	Fetal Kidney	kidney
10	chr10:91175600-91177200	Weak transcription	HMEC	breast
11	chr10:91175600-91177400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:91175600-91177400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:91175600-91177600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:91175600-91178000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:91175600-91179600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr10:91175600-91181200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr10:91175600-91181200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:91175600-91183800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:91175600-91188200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr10:91175600-91191800	Weak transcription	Psoas Muscle	Psoas
21	chr10:91175600-91191800	Weak transcription	Hela-S3	cervix
22	chr10:91175800-91177400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:91175800-91177400	Weak transcription	A549	lung
24	chr10:91175800-91177400	Weak transcription	HSMMtube	muscle
25	chr10:91175800-91177400	Enhancers	NHDF-Ad	bronchial
26	chr10:91175800-91177800	Enhancers	Brain Substantia Nigra	brain
27	chr10:91175800-91178000	Weak transcription	Stomach Mucosa	stomach
28	chr10:91175800-91179600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr10:91175800-91182600	Weak transcription	Thymus	Thymus
30	chr10:91176000-91177200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr10:91176000-91177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:91176000-91177200	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:91176000-91177200	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr10:91176000-91177200	Weak transcription	Right Ventricle	heart
35	chr10:91176000-91177400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr10:91176000-91177400	Enhancers	Small Intestine	intestine
37	chr10:91176000-91177600	Enhancers	Brain Angular Gyrus	brain
38	chr10:91176000-91177600	Enhancers	Colon Smooth Muscle	Colon
39	chr10:91176000-91177800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr10:91176000-91178400	Genic enhancers	Primary B cells from peripheral blood	blood
41	chr10:91176000-91178400	Genic enhancers	Fetal Muscle Leg	muscle
42	chr10:91176000-91179600	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr10:91176000-91180000	Weak transcription	Colonic Mucosa	Colon
44	chr10:91176200-91177200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:91176200-91177200	Enhancers	Liver	Liver
46	chr10:91176200-91177200	Weak transcription	Fetal Heart	heart
47	chr10:91176200-91177200	Weak transcription	Fetal Intestine Large	intestine
48	chr10:91176200-91177200	Active TSS	GM12878-XiMat	blood
49	chr10:91176200-91177400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:91176200-91177400	Enhancers	Brain Anterior Caudate	brain

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