Variant report

Variant	rs7919999
Chromosome Location	chr10:91154838-91154839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr10:91154696-91154950	GM12891	blood:	n/a	n/a
2	SPI1	chr10:91154727-91154932	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
IFIT1	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10159717	0.83[EUR][1000 genomes]
rs11203082	0.83[EUR][1000 genomes]
rs11203083	0.83[EUR][1000 genomes]
rs11203087	0.83[EUR][1000 genomes]
rs11203091	0.83[EUR][1000 genomes]
rs11203093	1.00[EUR][1000 genomes]
rs11203095	1.00[EUR][1000 genomes]
rs12243051	1.00[EUR][1000 genomes]
rs12243721	1.00[EUR][1000 genomes]
rs12243856	1.00[EUR][1000 genomes]
rs12245646	1.00[EUR][1000 genomes]
rs12250550	1.00[EUR][1000 genomes]
rs12250610	1.00[EUR][1000 genomes]
rs12251678	1.00[EUR][1000 genomes]
rs12256540	1.00[EUR][1000 genomes]
rs12259825	1.00[EUR][1000 genomes]
rs12259887	1.00[EUR][1000 genomes]
rs12263019	1.00[EUR][1000 genomes]
rs12263584	1.00[EUR][1000 genomes]
rs12267215	0.83[EUR][1000 genomes]
rs12268333	0.83[EUR][1000 genomes]
rs12269110	1.00[EUR][1000 genomes]
rs59633641	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7074809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079179	1.00[EUR][1000 genomes]
rs7090951	1.00[EUR][1000 genomes]
rs7910157	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91152800-91173600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:91152800-91174000	Weak transcription	Gastric	stomach
3	chr10:91153000-91164200	Weak transcription	Esophagus	oesophagus
4	chr10:91153200-91155200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr10:91153200-91155400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:91153200-91155600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:91153200-91156200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:91153200-91157400	Weak transcription	A549	lung
9	chr10:91153200-91157600	Weak transcription	HepG2	liver
10	chr10:91153200-91157800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:91153200-91162000	Weak transcription	HSMM	muscle
12	chr10:91153200-91163800	Weak transcription	Spleen	Spleen
13	chr10:91153200-91173600	Weak transcription	Brain Germinal Matrix	brain
14	chr10:91153400-91155000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:91153400-91155000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr10:91153400-91155200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:91153400-91155800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr10:91153400-91157400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:91153400-91158000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:91153400-91162200	Weak transcription	Placenta	Placenta
21	chr10:91153400-91162200	Weak transcription	Lung	lung
22	chr10:91153400-91163400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:91153400-91164000	Weak transcription	Pancreas	Pancrea
24	chr10:91153400-91172400	Weak transcription	Thymus	Thymus
25	chr10:91153600-91155000	Weak transcription	Aorta	Aorta
26	chr10:91153600-91155400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr10:91153600-91155400	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr10:91153600-91157600	Weak transcription	HSMMtube	muscle
29	chr10:91153600-91157800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:91153600-91162200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr10:91153600-91162200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:91153600-91165400	Weak transcription	Fetal Thymus	thymus
33	chr10:91153600-91173600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr10:91154000-91155000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:91154000-91155200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:91154000-91155400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:91154000-91155400	Enhancers	Liver	Liver
38	chr10:91154000-91157600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:91154000-91162200	Weak transcription	Primary T cells from cord blood	blood
40	chr10:91154000-91162200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:91154000-91162200	Weak transcription	Fetal Stomach	stomach
42	chr10:91154000-91162400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:91154000-91164200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr10:91154000-91166800	Weak transcription	Right Ventricle	heart
45	chr10:91154200-91155000	Active TSS	Brain Anterior Caudate	brain
46	chr10:91154200-91155000	Enhancers	Brain Cingulate Gyrus	brain
47	chr10:91154200-91155000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:91154200-91155200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:91154200-91155200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:91154200-91155200	Weak transcription	Fetal Heart	heart

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