Variant report

Variant	rs6586185
Chromosome Location	chr10:91104388-91104389
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:91100334-91104824	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91098435..91101056-chr10:91103383..91106129,3	K562	blood:

Variant related genes	Relation type
LIPA	TF binding region

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10159512	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159516	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10159652	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159694	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10159869	0.85[AMR][1000 genomes]
rs10159879	0.85[AMR][1000 genomes]
rs11203074	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203075	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11203077	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203081	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203084	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203085	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11203087	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241343	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12242568	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12244506	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12244571	0.89[AFR][1000 genomes]
rs12245627	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12250753	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12250860	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12251895	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12256980	0.95[AFR][1000 genomes]
rs12259713	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12259768	0.81[AFR][1000 genomes]
rs12261273	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12266581	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332332	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332333	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1332334	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1332337	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119593	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119665	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119672	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119790	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17119791	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs41284140	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586186	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6586187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6586189	0.85[AMR][1000 genomes]
rs6586190	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7081163	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7088379	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7091558	0.85[AMR][1000 genomes]
rs7099668	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7099681	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7100115	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367441	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73367444	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367447	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73367460	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73368528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7898580	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7901862	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7902096	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7902109	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7902380	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904924	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7906827	0.85[AMR][1000 genomes]
rs7907230	0.95[AFR][1000 genomes]
rs7907341	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7911396	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7916398	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7917725	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9663337	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9663529	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9663533	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91090200-91107600	Weak transcription	Pancreas	Pancrea
2	chr10:91093800-91106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:91093800-91106400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:91094000-91105400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:91094000-91110200	Weak transcription	Colonic Mucosa	Colon
6	chr10:91094000-91112000	Weak transcription	Esophagus	oesophagus
7	chr10:91094200-91106800	Weak transcription	Fetal Kidney	kidney
8	chr10:91094200-91108400	Weak transcription	Stomach Mucosa	stomach
9	chr10:91095200-91110400	Weak transcription	Colon Smooth Muscle	Colon
10	chr10:91095600-91105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:91097400-91105600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr10:91097600-91106200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:91097600-91106200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:91097600-91107400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:91097600-91107400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:91098800-91106400	Weak transcription	Psoas Muscle	Psoas
17	chr10:91098800-91111200	Weak transcription	Aorta	Aorta
18	chr10:91099400-91106000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:91099400-91106200	Weak transcription	HSMM	muscle
20	chr10:91099400-91107800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:91099400-91111000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:91099600-91106400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr10:91099600-91110400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:91099600-91110800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:91099800-91106400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:91099800-91110400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:91099800-91111000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:91100000-91106000	Weak transcription	NHLF	lung
29	chr10:91100000-91106400	Weak transcription	Spleen	Spleen
30	chr10:91100000-91106600	Weak transcription	Primary B cells from cord blood	blood
31	chr10:91100000-91106800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr10:91100000-91107400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:91100000-91107600	Weak transcription	Fetal Thymus	thymus
34	chr10:91100000-91110400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr10:91100000-91111000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr10:91100200-91106200	Weak transcription	Fetal Stomach	stomach
37	chr10:91100600-91106400	Weak transcription	Placenta	Placenta
38	chr10:91100600-91110400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:91100800-91106200	Weak transcription	Fetal Lung	lung
40	chr10:91101200-91105400	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr10:91101200-91105600	Weak transcription	Liver	Liver
42	chr10:91101200-91106000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr10:91101200-91106000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:91101200-91106400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:91101200-91106400	Weak transcription	Right Ventricle	heart
46	chr10:91101200-91107000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:91101200-91107400	Weak transcription	Lung	lung
48	chr10:91101200-91110000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:91101200-91111200	Weak transcription	Ovary	ovary
50	chr10:91101400-91105600	Weak transcription	Primary monocytes fromperipheralblood	blood

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