Variant report

Variant	rs7088
Chromosome Location	chr6:166736362-166736363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166733862..166736433-chr6:166795444..166796980,2	K562	blood:
2	chr6:166735891..166737845-chr6:166741611..166743654,2	K562	blood:

Variant related genes	Relation type
ENSG00000261420	Chromatin interaction
ENSG00000060762	Chromatin interaction
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12209616	0.87[ASN][1000 genomes]
rs1830558	0.99[ASN][1000 genomes]
rs4709111	0.96[ASN][1000 genomes]
rs4710042	0.96[ASN][1000 genomes]
rs68016351	0.87[ASN][1000 genomes]
rs6916128	0.89[ASN][1000 genomes]
rs73263155	0.87[ASN][1000 genomes]
rs73788236	0.87[ASN][1000 genomes]
rs7767887	0.90[ASN][1000 genomes]
rs927190	0.99[ASN][1000 genomes]
rs9347123	1.00[ASN][1000 genomes]
rs9348119	1.00[ASN][1000 genomes]
rs9348121	0.96[ASN][1000 genomes]
rs9355571	0.99[ASN][1000 genomes]
rs9366004	0.99[ASN][1000 genomes]
rs9459653	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166723200-166738800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:166723200-166744200	Weak transcription	Right Atrium	heart
3	chr6:166727400-166736400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:166727400-166739000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:166727600-166736400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:166728400-166736400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:166728600-166736400	Weak transcription	NHDF-Ad	bronchial
8	chr6:166728600-166737800	Weak transcription	Brain Germinal Matrix	brain
9	chr6:166729000-166745400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:166729200-166744200	Weak transcription	Stomach Mucosa	stomach
11	chr6:166729600-166744000	Weak transcription	Small Intestine	intestine
12	chr6:166730400-166740600	Weak transcription	Fetal Kidney	kidney
13	chr6:166730400-166744200	Weak transcription	Fetal Brain Male	brain
14	chr6:166730600-166739000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:166730800-166736600	Weak transcription	NHEK	skin
16	chr6:166730800-166739000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:166731000-166736400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:166731400-166739000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:166731400-166742800	Strong transcription	Fetal Intestine Small	intestine
20	chr6:166731400-166742800	Strong transcription	Fetal Stomach	stomach
21	chr6:166731600-166739000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr6:166731600-166743000	Strong transcription	Thymus	Thymus
23	chr6:166731800-166738400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:166731800-166739000	Weak transcription	A549	lung
25	chr6:166731800-166742600	Strong transcription	Placenta	Placenta
26	chr6:166731800-166742800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:166731800-166743000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:166731800-166743000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:166731800-166743400	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:166732000-166738400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:166732000-166740200	Strong transcription	Fetal Brain Female	brain
32	chr6:166732000-166742800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr6:166732000-166743000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:166732200-166736400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:166732200-166743000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:166732200-166743000	Strong transcription	Fetal Thymus	thymus
37	chr6:166732200-166743000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr6:166732400-166737600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:166732400-166739000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr6:166732400-166739000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:166732400-166742800	Strong transcription	Adipose Nuclei	Adipose
42	chr6:166732400-166742800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:166732400-166743000	Strong transcription	Liver	Liver
44	chr6:166732400-166743000	Strong transcription	Dnd41	blood
45	chr6:166732400-166744000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:166732400-166744600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr6:166732400-166751600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:166732600-166737800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:166732600-166738800	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:166732600-166742600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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