Variant report

Variant	rs9366004
Chromosome Location	chr6:166730160-166730161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166729262..166731878-chr6:166741666..166743903,2	K562	blood:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12209616	0.88[ASN][1000 genomes]
rs1830558	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4709111	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4710042	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68016351	0.88[ASN][1000 genomes]
rs6916128	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7088	0.99[ASN][1000 genomes]
rs73263155	0.88[ASN][1000 genomes]
rs73788236	0.88[ASN][1000 genomes]
rs7767887	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs927190	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9347123	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9348119	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9348121	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9355571	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9459653	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886936	chr6:166714024-166731289	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
4	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166722600-166732800	Weak transcription	GM12878-XiMat	blood
2	chr6:166722600-166735600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:166722800-166731200	Weak transcription	Spleen	Spleen
4	chr6:166723000-166731400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:166723000-166732000	Weak transcription	Gastric	stomach
6	chr6:166723200-166732400	Weak transcription	Liver	Liver
7	chr6:166723200-166735400	Weak transcription	Brain Substantia Nigra	brain
8	chr6:166723200-166735600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:166723200-166738800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:166723200-166744200	Weak transcription	Right Atrium	heart
11	chr6:166723600-166735800	Weak transcription	Brain Anterior Caudate	brain
12	chr6:166723800-166736000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:166724200-166732400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:166725400-166732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:166726000-166731400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:166726200-166731400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:166726200-166731600	Weak transcription	Thymus	Thymus
18	chr6:166726400-166732600	Weak transcription	Primary T cells from cord blood	blood
19	chr6:166726600-166731400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:166726600-166731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:166726800-166731800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:166726800-166731800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:166726800-166732000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:166727000-166731200	Enhancers	Fetal Intestine Small	intestine
25	chr6:166727000-166731200	Weak transcription	K562	blood
26	chr6:166727000-166732000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:166727000-166732400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:166727200-166731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:166727200-166732000	Weak transcription	Fetal Brain Female	brain
30	chr6:166727200-166732600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:166727400-166732200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:166727400-166732200	Weak transcription	Fetal Thymus	thymus
33	chr6:166727400-166732400	Weak transcription	Dnd41	blood
34	chr6:166727400-166734600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:166727400-166734800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr6:166727400-166736400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:166727400-166739000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:166727600-166736400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr6:166727800-166733400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:166727800-166736200	Weak transcription	Fetal Lung	lung
41	chr6:166728000-166731600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:166728000-166732600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:166728000-166732800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:166728000-166733600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:166728000-166735800	Weak transcription	NHLF	lung
46	chr6:166728200-166731800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:166728200-166732200	Weak transcription	Primary B cells from cord blood	blood
48	chr6:166728200-166732600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:166728200-166732600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:166728200-166732800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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