Variant report

Variant	rs7088546
Chromosome Location	chr10:97171430-97171431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97168759..97171554-chr10:97179221..97181163,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12415527	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1410060	0.86[CHD][hapmap]
rs3818539	0.86[CHD][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7088546	CRTAC1	cis	cerebellum	SCAN

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97156800-97173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
4	chr10:97157000-97173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97157000-97174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
7	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
8	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:97165400-97177200	Strong transcription	HepG2	liver
11	chr10:97166400-97185800	Weak transcription	Fetal Lung	lung
12	chr10:97166600-97171800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:97167000-97173600	Weak transcription	Gastric	stomach
14	chr10:97167000-97173800	Weak transcription	Brain Germinal Matrix	brain
15	chr10:97167200-97173800	Weak transcription	Pancreas	Pancrea
16	chr10:97167200-97183200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:97167600-97172000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
18	chr10:97167800-97173400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:97168000-97173400	Weak transcription	Fetal Intestine Small	intestine
20	chr10:97168200-97172600	Weak transcription	Psoas Muscle	Psoas
21	chr10:97168200-97173800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:97168200-97174000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:97168200-97174000	Weak transcription	Lung	lung
24	chr10:97168600-97175200	Weak transcription	HSMMtube	muscle
25	chr10:97169000-97177000	Strong transcription	Liver	Liver
26	chr10:97169200-97172000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:97169200-97172400	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:97169200-97180400	Weak transcription	Ovary	ovary
29	chr10:97169400-97171600	Genic enhancers	Rectal Smooth Muscle	rectum
30	chr10:97169400-97174400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:97169600-97172000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:97169600-97174400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr10:97169800-97172000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:97169800-97172400	Strong transcription	Colon Smooth Muscle	Colon
36	chr10:97169800-97173000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:97169800-97173800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:97169800-97174200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:97169800-97182800	Weak transcription	Stomach Mucosa	stomach
40	chr10:97170000-97172200	Weak transcription	Brain Angular Gyrus	brain
41	chr10:97170200-97184600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:97170400-97172200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:97170400-97173400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:97170400-97173800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:97170400-97173800	Weak transcription	Brain Substantia Nigra	brain
46	chr10:97170400-97175200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:97170600-97172200	Weak transcription	Brain Anterior Caudate	brain
48	chr10:97170600-97172800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr10:97170600-97173000	Weak transcription	Fetal Stomach	stomach
50	chr10:97170600-97173200	Weak transcription	Brain Cingulate Gyrus	brain

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