Variant report

Variant	rs3818539
Chromosome Location	chr10:97174164-97174165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1410060	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1609592	0.86[ASN][1000 genomes]
rs17849168	0.83[EUR][1000 genomes]
rs3818540	1.00[CEU][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs3927495	0.86[ASN][1000 genomes]
rs7068867	0.83[EUR][1000 genomes]
rs7088546	0.86[CHD][hapmap]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
3	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
4	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
5	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:97165400-97177200	Strong transcription	HepG2	liver
8	chr10:97166400-97185800	Weak transcription	Fetal Lung	lung
9	chr10:97167200-97183200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr10:97168600-97175200	Weak transcription	HSMMtube	muscle
11	chr10:97169000-97177000	Strong transcription	Liver	Liver
12	chr10:97169200-97180400	Weak transcription	Ovary	ovary
13	chr10:97169400-97174400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:97169600-97174400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:97169800-97174200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:97169800-97182800	Weak transcription	Stomach Mucosa	stomach
18	chr10:97170200-97184600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:97170400-97175200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:97170600-97175000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:97170600-97175200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:97171000-97174200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:97171000-97175200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:97171000-97179200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:97171000-97186600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:97171000-97208000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:97171600-97175200	Active TSS	Left Ventricle	heart
29	chr10:97172200-97174600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:97172200-97174800	Enhancers	Brain Angular Gyrus	brain
31	chr10:97172400-97176000	Strong transcription	Placenta	Placenta
32	chr10:97172400-97176600	Genic enhancers	Colon Smooth Muscle	Colon
33	chr10:97172400-97177000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr10:97172800-97174600	Weak transcription	Fetal Brain Female	brain
35	chr10:97173000-97175400	Strong transcription	Fetal Stomach	stomach
36	chr10:97173200-97174200	Enhancers	Brain Cingulate Gyrus	brain
37	chr10:97173200-97175400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:97173400-97174400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:97173400-97174400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
40	chr10:97173400-97174600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
41	chr10:97173400-97175400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:97173400-97177000	Strong transcription	Fetal Intestine Small	intestine
43	chr10:97173600-97175800	Strong transcription	Gastric	stomach
44	chr10:97173600-97176000	Genic enhancers	Aorta	Aorta
45	chr10:97173600-97185200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:97173800-97174200	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr10:97173800-97174200	Flanking Active TSS	Psoas Muscle	Psoas
48	chr10:97173800-97174400	Genic enhancers	Brain Germinal Matrix	brain
49	chr10:97173800-97174400	Genic enhancers	Brain Inferior Temporal Lobe	brain
50	chr10:97173800-97174400	Flanking Active TSS	Fetal Heart	heart

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