Variant report

Variant	rs3818540
Chromosome Location	chr10:97165811-97165812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97161181..97166322-chr10:97166660..97170109,5	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10882586	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs11188300	0.90[CHB][hapmap]
rs12219964	0.86[CHB][hapmap]
rs12220134	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs1410060	0.90[CEU][hapmap];0.88[GIH][hapmap]
rs17110707	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17849168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274632	0.81[CHB][hapmap]
rs35556067	1.00[ASN][1000 genomes]
rs3818539	1.00[CEU][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs57682907	0.96[ASN][1000 genomes]
rs6583993	0.81[CHB][hapmap]
rs7068867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069281	0.81[CHB][hapmap]
rs7096788	0.86[CHB][hapmap];0.80[CHD][hapmap]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
2	chr10:97151000-97166200	Strong transcription	Liver	Liver
3	chr10:97151800-97168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:97154600-97168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:97155400-97168000	Strong transcription	Fetal Intestine Small	intestine
7	chr10:97155400-97170800	Enhancers	Right Atrium	heart
8	chr10:97156000-97166200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:97156800-97173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
11	chr10:97157000-97173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:97157000-97174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
14	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
15	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:97158800-97166400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:97159000-97166000	Weak transcription	Brain Angular Gyrus	brain
18	chr10:97159000-97166400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97159000-97166800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:97159000-97167800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:97159000-97168000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:97159000-97168000	Weak transcription	HSMM	muscle
23	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:97159800-97167800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:97160000-97166000	Strong transcription	Fetal Stomach	stomach
26	chr10:97160400-97166600	Weak transcription	Fetal Brain Male	brain
27	chr10:97160800-97166200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:97161800-97167800	Genic enhancers	Stomach Smooth Muscle	stomach
29	chr10:97162000-97168000	Weak transcription	Ovary	ovary
30	chr10:97162200-97166400	Weak transcription	HMEC	breast
31	chr10:97162800-97166000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr10:97162800-97171000	Strong transcription	Placenta	Placenta
33	chr10:97162800-97171200	Strong transcription	Fetal Intestine Large	intestine
34	chr10:97163000-97169400	Genic enhancers	Left Ventricle	heart
35	chr10:97163600-97166000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
36	chr10:97163600-97166000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
37	chr10:97163800-97166800	Genic enhancers	Colon Smooth Muscle	Colon
38	chr10:97164000-97166600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:97164000-97167000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:97164000-97168200	Genic enhancers	Aorta	Aorta
41	chr10:97164000-97168600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:97164200-97168000	Genic enhancers	Adipose Nuclei	Adipose
43	chr10:97164400-97166000	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr10:97164400-97168200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr10:97164400-97168200	Enhancers	Psoas Muscle	Psoas
46	chr10:97164600-97166400	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:97164600-97166400	Genic enhancers	Right Ventricle	heart
48	chr10:97164600-97166400	Strong transcription	HSMMtube	muscle
49	chr10:97164600-97166800	Genic enhancers	Duodenum Smooth Muscle	Duodenum
50	chr10:97164800-97166400	Weak transcription	Brain Inferior Temporal Lobe	brain

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