Variant report

Variant	rs12219964
Chromosome Location	chr10:97147219-97147220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr10:97147172-97147514	GM12878	blood:	n/a	n/a
2	SPI1	chr10:97147134-97147464	GM12891	blood:	n/a	n/a
3	SPI1	chr10:97147155-97147595	GM12891	blood:	n/a	n/a
4	SPI1	chr10:97147068-97147702	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97146581..97148830-chr10:97151387..97153337,2	K562	blood:

Variant related genes	Relation type
SORBS1	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10882581	0.90[EUR][1000 genomes]
rs10882584	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10882585	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10882586	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188272	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes]
rs11188276	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188279	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs11188280	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11188286	0.90[EUR][1000 genomes]
rs11188292	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188300	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11813979	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12220134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572852	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs14420	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs17110707	0.86[CHB][hapmap]
rs1960067	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2274631	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes]
rs2274632	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes]
rs2296966	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs35338286	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3740510	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3814155	0.90[EUR][1000 genomes]
rs3818540	0.86[CHB][hapmap]
rs3818589	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes]
rs57682907	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58783242	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6583993	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs67857865	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7069281	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7081119	0.82[AMR][1000 genomes]
rs7085208	1.00[CEU][hapmap]
rs7085990	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7088743	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7088852	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7090345	1.00[CEU][hapmap]
rs7094119	0.94[EUR][1000 genomes]
rs7096788	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs72822521	0.87[EUR][1000 genomes]
rs72822522	0.90[EUR][1000 genomes]
rs72822548	0.84[ASN][1000 genomes]
rs7898995	0.86[EUR][1000 genomes]
rs9313	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
4	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
5	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:97137200-97147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:97137200-97148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr10:97137800-97147400	Strong transcription	HepG2	liver
10	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:97138400-97147400	Weak transcription	Right Atrium	heart
12	chr10:97140000-97148200	Weak transcription	Fetal Heart	heart
13	chr10:97140600-97158600	Weak transcription	HSMM	muscle
14	chr10:97140800-97148000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:97140800-97152400	Weak transcription	Colonic Mucosa	Colon
16	chr10:97141000-97147800	Weak transcription	Fetal Brain Male	brain
17	chr10:97142200-97147400	Weak transcription	Gastric	stomach
18	chr10:97142200-97147400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:97142200-97151800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:97142200-97152400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:97142400-97147600	Weak transcription	Brain Substantia Nigra	brain
22	chr10:97142400-97152400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:97143000-97148800	Weak transcription	Brain Germinal Matrix	brain
25	chr10:97143000-97151400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:97143400-97147400	Weak transcription	Brain Anterior Caudate	brain
27	chr10:97143600-97151000	Weak transcription	Fetal Lung	lung
28	chr10:97143600-97151400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:97144000-97151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:97144000-97152400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:97144000-97152400	Weak transcription	Psoas Muscle	Psoas
32	chr10:97144000-97155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:97144200-97149400	Weak transcription	HSMMtube	muscle
34	chr10:97144200-97151600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:97144400-97147400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:97144400-97147400	Strong transcription	Left Ventricle	heart
37	chr10:97144400-97148200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:97144400-97149400	Weak transcription	Aorta	Aorta
39	chr10:97144400-97152400	Weak transcription	Ovary	ovary
40	chr10:97144400-97154000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:97144400-97155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr10:97144600-97147400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:97144600-97149600	Weak transcription	Lung	lung
44	chr10:97144800-97148000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:97145000-97148000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:97145000-97150200	Enhancers	Stomach Mucosa	stomach
47	chr10:97145000-97151200	Weak transcription	Fetal Brain Female	brain
48	chr10:97145000-97153200	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:97145800-97150200	Enhancers	Liver	Liver
50	chr10:97146000-97147600	Strong transcription	Right Ventricle	heart

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