Variant report

Variant	rs9313
Chromosome Location	chr10:97071872-97071873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97071593..97074402-chr10:97139756..97142626,2	K562	blood:
2	chr10:97071047..97076253-chr10:97076532..97079541,6	K562	blood:
3	chr10:97071603..97074212-chr10:97074276..97076848,4	K562	blood:
4	chr10:97054860..97057387-chr10:97070796..97073546,2	K562	blood:
5	chr10:97048197..97050132-chr10:97070905..97072692,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10882581	0.84[EUR][1000 genomes]
rs10882584	0.86[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs10882585	0.86[CEU][hapmap]
rs10882586	0.86[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11188272	0.86[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188276	0.86[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188279	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11188280	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11188286	0.84[EUR][1000 genomes]
rs11188300	0.86[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs1132810	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11813979	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12098329	1.00[ASW][hapmap]
rs12217326	0.98[EUR][1000 genomes]
rs12219964	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12220134	0.86[CEU][hapmap];0.91[CHB][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap]
rs14420	1.00[ASW][hapmap];0.86[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1960067	0.82[EUR][1000 genomes]
rs2274631	0.86[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs2274632	0.86[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs2296966	0.86[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35338286	0.84[EUR][1000 genomes]
rs3740510	0.86[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3814155	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3818589	0.86[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs58783242	0.81[EUR][1000 genomes]
rs6583993	0.86[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs7069281	0.86[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs7081119	0.82[ASN][1000 genomes]
rs7085208	0.86[CEU][hapmap]
rs7085990	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7088743	0.84[EUR][1000 genomes]
rs7088852	0.84[EUR][1000 genomes]
rs7090345	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs7094119	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7096788	0.86[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs72822521	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72822522	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97055600-97072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:97063400-97072400	Weak transcription	Fetal Brain Female	brain
3	chr10:97063400-97073600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:97064000-97073200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:97064600-97078200	Weak transcription	Colonic Mucosa	Colon
6	chr10:97066000-97073000	Weak transcription	Fetal Intestine Large	intestine
7	chr10:97066000-97073600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:97067200-97073400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:97068400-97072200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:97068600-97072000	Weak transcription	Adipose Nuclei	Adipose
11	chr10:97068600-97072800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:97068600-97073800	Weak transcription	Brain Angular Gyrus	brain
13	chr10:97069000-97072400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:97069000-97073000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:97069000-97073200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:97069000-97073400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:97069000-97073600	Weak transcription	HepG2	liver
18	chr10:97069000-97075600	Enhancers	K562	blood
19	chr10:97069200-97072200	Weak transcription	HUVEC	blood vessel
20	chr10:97069200-97072600	Weak transcription	Psoas Muscle	Psoas
21	chr10:97069200-97072600	Weak transcription	HSMMtube	muscle
22	chr10:97069200-97087000	Weak transcription	HSMM	muscle
23	chr10:97069400-97072400	Weak transcription	Left Ventricle	heart
24	chr10:97069400-97072600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:97069400-97074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:97069600-97072000	Weak transcription	Hela-S3	cervix
27	chr10:97069600-97073000	Weak transcription	Fetal Stomach	stomach
28	chr10:97069600-97073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:97069800-97072200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:97069800-97075200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:97070000-97073000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:97070200-97072600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:97070200-97072600	Weak transcription	A549	lung
34	chr10:97070200-97073200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:97070200-97074000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr10:97070200-97074200	Enhancers	Fetal Heart	heart
37	chr10:97070400-97072200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:97070400-97072200	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:97070400-97072400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:97070400-97073200	Weak transcription	Brain Germinal Matrix	brain
41	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
42	chr10:97070600-97072000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:97070600-97072200	Weak transcription	Placenta	Placenta
44	chr10:97070600-97072200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:97070600-97072400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:97070600-97072600	Weak transcription	Liver	Liver
47	chr10:97070800-97072000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:97070800-97072200	Weak transcription	Stomach Mucosa	stomach
49	chr10:97070800-97072600	Weak transcription	Brain Anterior Caudate	brain
50	chr10:97070800-97073400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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