Variant report

Variant	rs7094119
Chromosome Location	chr10:97094777-97094778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97091158..97093235-chr10:97093326..97095164,2	K562	blood:
2	chr10:97080532..97082399-chr10:97094368..97096857,2	K562	blood:
3	chr10:97049700..97052145-chr10:97094615..97096548,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10882581	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882584	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882585	0.89[EUR][1000 genomes]
rs10882586	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188272	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188276	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188279	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188280	1.00[ASN][1000 genomes]
rs11188286	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188292	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188300	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1132810	0.83[EUR][1000 genomes]
rs11813979	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12217326	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12219964	0.94[EUR][1000 genomes]
rs12220134	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12572852	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs14420	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1960067	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2274631	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274632	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2296966	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35338286	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740510	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814155	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3818589	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58783242	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583993	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67857865	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7069281	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7081119	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7081424	0.82[ASN][1000 genomes]
rs7085990	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7088743	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7088852	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7090345	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7096788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72822521	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72822522	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72822548	0.89[ASN][1000 genomes]
rs7898995	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9313	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
3	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:97075200-97098800	Weak transcription	Ovary	ovary
8	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
9	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
12	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:97083000-97098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:97084400-97095600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:97087800-97095800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:97087800-97097800	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
18	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:97088400-97095000	Weak transcription	Fetal Heart	heart
20	chr10:97089000-97096400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:97089200-97097200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:97091000-97098000	Genic enhancers	Left Ventricle	heart
23	chr10:97091000-97102000	Strong transcription	Fetal Brain Female	brain
24	chr10:97091400-97095400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:97091600-97099800	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:97091800-97101400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:97092600-97098200	Strong transcription	Fetal Intestine Large	intestine
28	chr10:97092600-97100200	Strong transcription	Liver	Liver
29	chr10:97093000-97094800	Strong transcription	Gastric	stomach
30	chr10:97093200-97095800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:97093200-97097800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:97093200-97099200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:97093200-97103600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:97093200-97106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:97093400-97095800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:97093400-97103600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr10:97093400-97103600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr10:97093600-97095000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:97093600-97095000	Enhancers	NHDF-Ad	bronchial
40	chr10:97093600-97095200	Enhancers	NH-A	brain
41	chr10:97093600-97096600	Genic enhancers	Adipose Nuclei	Adipose
42	chr10:97093600-97096800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr10:97093800-97095000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:97093800-97095000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr10:97093800-97095200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:97093800-97095200	Enhancers	K562	blood
47	chr10:97093800-97095400	Enhancers	HMEC	breast
48	chr10:97093800-97095400	Enhancers	NHEK	skin
49	chr10:97093800-97098400	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr10:97094000-97094800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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