Variant report

Variant	rs1960067
Chromosome Location	chr10:97121314-97121315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97050804..97052725-chr10:97120124..97123059,2	K562	blood:
2	chr10:97050675..97052304-chr10:97120111..97123059,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10882581	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882584	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882585	0.94[EUR][1000 genomes]
rs10882586	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188272	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188276	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188279	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11188280	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11188286	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188292	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11188300	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1132810	0.84[EUR][1000 genomes]
rs11813979	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12217326	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12219964	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12220134	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12572852	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs14420	0.98[EUR][1000 genomes]
rs2274631	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2274632	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2296966	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35338286	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740510	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3814155	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3818589	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57682907	0.82[EUR][1000 genomes]
rs58783242	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6583993	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67857865	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7069281	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7081119	0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7085990	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7088743	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088852	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7090345	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7094119	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7096788	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72822521	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72822522	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72822548	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7898995	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9313	0.82[EUR][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
4	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
9	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97116000-97138200	Weak transcription	Ovary	ovary
11	chr10:97116400-97121600	Weak transcription	Right Atrium	heart
12	chr10:97116400-97121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:97116400-97123000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:97116400-97130600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:97116600-97127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:97116600-97130800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:97116800-97121600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:97116800-97122800	Weak transcription	Fetal Intestine Large	intestine
22	chr10:97116800-97123000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:97116800-97130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
25	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
27	chr10:97117000-97122800	Weak transcription	Fetal Heart	heart
28	chr10:97117000-97123000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:97117000-97130800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:97117200-97122400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:97117200-97128000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:97117400-97121600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:97117400-97121600	Weak transcription	Brain Anterior Caudate	brain
34	chr10:97117400-97121600	Weak transcription	Psoas Muscle	Psoas
35	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
36	chr10:97117600-97125000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:97118000-97121600	Weak transcription	Liver	Liver
39	chr10:97118000-97135800	Weak transcription	Fetal Brain Female	brain
40	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
41	chr10:97118200-97125000	Weak transcription	Placenta	Placenta
42	chr10:97118800-97121400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr10:97118800-97121600	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:97119000-97121600	Weak transcription	Right Ventricle	heart
45	chr10:97119200-97121600	Enhancers	Rectal Smooth Muscle	rectum
46	chr10:97119200-97122600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
47	chr10:97119600-97121600	Enhancers	Colon Smooth Muscle	Colon
48	chr10:97119600-97122000	Strong transcription	Fetal Intestine Small	intestine
49	chr10:97119600-97122600	Genic enhancers	Left Ventricle	heart
50	chr10:97120000-97121800	Enhancers	HUVEC	blood vessel

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