Variant report

Variant	rs11188280
Chromosome Location	chr10:97089687-97089688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97047892..97049981-chr10:97088478..97090933,2	MCF-7	breast:
2	chr10:97074843..97077067-chr10:97087421..97090006,2	K562	blood:
3	chr10:97067391..97069707-chr10:97088772..97090844,2	MCF-7	breast:
4	chr10:97089456..97092597-chr10:97097481..97100354,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10882581	0.91[ASN][1000 genomes]
rs10882584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10882585	1.00[CEU][hapmap]
rs10882586	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11188272	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11188276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11188279	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188286	0.93[ASN][1000 genomes]
rs11188292	0.89[ASN][1000 genomes]
rs11188295	0.87[EUR][1000 genomes]
rs11188300	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11813979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12217326	0.94[ASN][1000 genomes]
rs12219964	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12220134	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12572852	0.80[ASN][1000 genomes]
rs14420	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1960067	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2274631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2274632	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs2296966	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs35338286	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3740510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3814155	0.82[ASN][1000 genomes]
rs3818589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs58783242	0.98[ASN][1000 genomes]
rs6583993	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7069281	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs7081119	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7081424	0.82[ASN][1000 genomes]
rs7085208	1.00[CEU][hapmap]
rs7085990	0.89[ASN][1000 genomes]
rs7088743	0.94[ASN][1000 genomes]
rs7088852	0.94[ASN][1000 genomes]
rs7090345	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7094119	1.00[ASN][1000 genomes]
rs7096788	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs72822521	0.89[ASN][1000 genomes]
rs72822522	0.89[ASN][1000 genomes]
rs72822548	0.89[ASN][1000 genomes]
rs7898995	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9313	0.86[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
4	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
5	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:97075200-97098800	Weak transcription	Ovary	ovary
11	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
12	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
15	chr10:97080400-97093200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:97081800-97091000	Weak transcription	Fetal Intestine Large	intestine
18	chr10:97081800-97092600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:97083000-97098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:97083400-97093000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr10:97083800-97091000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:97084400-97095600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:97084600-97092600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:97084800-97094200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:97085000-97091200	Weak transcription	Brain Germinal Matrix	brain
26	chr10:97085000-97091200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:97085000-97091600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr10:97086400-97091400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:97087400-97089800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:97087400-97090000	Genic enhancers	Colon Smooth Muscle	Colon
31	chr10:97087400-97091800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:97087600-97089800	Weak transcription	HepG2	liver
33	chr10:97087600-97092400	Weak transcription	HSMMtube	muscle
34	chr10:97087600-97093800	Strong transcription	Placenta	Placenta
35	chr10:97087600-97094000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr10:97087600-97094000	Weak transcription	Stomach Mucosa	stomach
37	chr10:97087800-97089800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:97087800-97090800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:97087800-97092400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:97087800-97093800	Weak transcription	K562	blood
41	chr10:97087800-97095800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:97087800-97097800	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
44	chr10:97088000-97090800	Weak transcription	Fetal Muscle Leg	muscle
45	chr10:97088000-97091000	Weak transcription	Fetal Brain Female	brain
46	chr10:97088000-97091000	Weak transcription	Fetal Stomach	stomach
47	chr10:97088000-97091000	Weak transcription	Psoas Muscle	Psoas
48	chr10:97088000-97093000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:97088000-97093000	Weak transcription	Gastric	stomach
50	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum

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