Variant report

Variant	rs2274632
Chromosome Location	chr10:97114560-97114561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97048384..97051804-chr10:97112721..97115504,3	MCF-7	breast:
2	chr10:97051927..97054727-chr10:97113861..97115578,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10882581	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882584	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882585	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10882586	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11188272	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11188276	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188279	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11188280	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188286	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188292	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11188300	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1132810	0.84[EUR][1000 genomes]
rs11813979	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12217326	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12219964	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes]
rs12220134	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12572852	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs14420	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17110707	0.81[CHB][hapmap]
rs1960067	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274631	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2296966	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35338286	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740510	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3814155	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3818540	0.81[CHB][hapmap]
rs3818589	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57682907	0.82[EUR][1000 genomes]
rs58783242	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6583993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67857865	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7069281	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7081119	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7085208	1.00[CEU][hapmap]
rs7085990	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7088743	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088852	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7090345	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs7094119	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7096788	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72822521	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72822522	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72822548	0.87[ASN][1000 genomes]
rs7898995	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9313	0.86[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
3	chr10:97094600-97118000	Weak transcription	HSMM	muscle
4	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
6	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
7	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
9	chr10:97103400-97118000	Strong transcription	Fetal Brain Female	brain
10	chr10:97105000-97118200	Strong transcription	Aorta	Aorta
11	chr10:97107000-97115600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:97107200-97120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:97107600-97116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:97107600-97116600	Genic enhancers	Adipose Nuclei	Adipose
16	chr10:97107600-97119800	Strong transcription	Fetal Stomach	stomach
17	chr10:97107800-97115000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:97107800-97115200	Strong transcription	Left Ventricle	heart
19	chr10:97107800-97115400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:97107800-97119400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:97108400-97114600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
22	chr10:97108600-97115800	Strong transcription	HSMMtube	muscle
23	chr10:97108600-97119200	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:97109200-97120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:97110000-97117400	Strong transcription	Brain Germinal Matrix	brain
28	chr10:97110400-97116800	Strong transcription	Brain Cingulate Gyrus	brain
29	chr10:97110400-97116800	Strong transcription	Fetal Intestine Large	intestine
30	chr10:97110400-97116800	Strong transcription	Fetal Muscle Leg	muscle
31	chr10:97110600-97116800	Strong transcription	Brain Angular Gyrus	brain
32	chr10:97110600-97117200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:97110800-97115200	Strong transcription	Right Ventricle	heart
34	chr10:97111000-97115200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr10:97111000-97116400	Weak transcription	Fetal Heart	heart
36	chr10:97111000-97117400	Strong transcription	Brain Anterior Caudate	brain
37	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:97111200-97115000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:97111400-97115600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:97111600-97115200	Weak transcription	Lung	lung
41	chr10:97111600-97115200	Weak transcription	Pancreas	Pancrea
42	chr10:97111600-97115200	Weak transcription	Right Atrium	heart
43	chr10:97111600-97115600	Weak transcription	Fetal Lung	lung
44	chr10:97111600-97117600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr10:97111800-97114800	Strong transcription	HepG2	liver
46	chr10:97111800-97115200	Strong transcription	Placenta	Placenta
47	chr10:97111800-97115600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:97111800-97117000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr10:97112000-97115200	Weak transcription	Gastric	stomach
50	chr10:97112200-97117200	Strong transcription	Duodenum Smooth Muscle	Duodenum

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