Variant report

Variant	rs12220134
Chromosome Location	chr10:97129606-97129607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97129388..97130276-chr9:134854076..134854902,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10882581	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882584	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882585	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10882586	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188272	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188276	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188279	0.90[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11188280	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs11188286	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188292	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11188300	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11813979	0.90[CHB][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12217326	0.85[AMR][1000 genomes]
rs12219964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12572852	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs14420	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.90[EUR][1000 genomes]
rs17110707	0.86[CHB][hapmap];0.88[CHD][hapmap]
rs1960067	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2274631	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2274632	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2296966	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.85[MKK][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35338286	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3740510	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3814155	0.90[EUR][1000 genomes]
rs3818540	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs3818589	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57682907	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58783242	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6583993	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67857865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069281	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081119	0.89[AMR][1000 genomes]
rs7085208	1.00[CEU][hapmap]
rs7085990	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7088743	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7088852	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7090345	1.00[CEU][hapmap]
rs7094119	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7096788	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72213123	0.84[ASN][1000 genomes]
rs72822521	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72822522	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72822548	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7898995	0.86[EUR][1000 genomes]
rs9313	0.86[CEU][hapmap];0.91[CHB][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
3	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
6	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
7	chr10:97116000-97138200	Weak transcription	Ovary	ovary
8	chr10:97116400-97130600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:97116600-97130800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:97116800-97130400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
15	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
17	chr10:97117000-97130800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
19	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr10:97118000-97135800	Weak transcription	Fetal Brain Female	brain
21	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
22	chr10:97120400-97141400	Weak transcription	Gastric	stomach
23	chr10:97120600-97130400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
25	chr10:97121800-97130400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr10:97122000-97135000	Weak transcription	Brain Hippocampus Middle	brain
27	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
28	chr10:97122200-97135000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:97122400-97131600	Weak transcription	Psoas Muscle	Psoas
30	chr10:97123200-97130600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:97123200-97130800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:97124600-97135200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:97124600-97135200	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:97124800-97130200	Strong transcription	Fetal Intestine Small	intestine
35	chr10:97124800-97130800	Strong transcription	Fetal Stomach	stomach
36	chr10:97124800-97134600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:97124800-97137200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:97125000-97133000	Strong transcription	Placenta	Placenta
39	chr10:97125000-97133600	Strong transcription	Liver	Liver
40	chr10:97125200-97134200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:97126200-97131200	Strong transcription	Right Ventricle	heart
42	chr10:97126200-97139400	Weak transcription	Lung	lung
43	chr10:97126800-97137800	Weak transcription	HepG2	liver
44	chr10:97127400-97130200	Strong transcription	Aorta	Aorta
45	chr10:97129000-97130600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr10:97129000-97135400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:97129200-97130200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:97129200-97132000	Strong transcription	Fetal Intestine Large	intestine
49	chr10:97129200-97133000	Strong transcription	Adipose Nuclei	Adipose
50	chr10:97129400-97130400	Weak transcription	Fetal Heart	heart

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