Variant report

Variant	rs3818589
Chromosome Location	chr10:97101745-97101746
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97095230..97097767-chr10:97100422..97102441,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10882581	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882585	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10882586	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188272	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11188276	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188279	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11188280	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs11188286	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188292	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188300	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1132810	0.86[EUR][1000 genomes]
rs11813979	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12217326	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12219964	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes]
rs12220134	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12572852	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs14420	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1960067	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2274631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2274632	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2296966	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35338286	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3814155	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57682907	0.80[EUR][1000 genomes]
rs58783242	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6583993	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67857865	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7069281	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7081119	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7081424	0.82[ASN][1000 genomes]
rs7085208	1.00[CEU][hapmap]
rs7085990	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7088743	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7088852	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7090345	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs7094119	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7096788	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72822521	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72822522	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72822548	0.91[ASN][1000 genomes]
rs7898995	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9313	0.86[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
4	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
6	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:97091000-97102000	Strong transcription	Fetal Brain Female	brain
8	chr10:97093200-97103600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:97093200-97106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:97093400-97103600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr10:97093400-97103600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:97094400-97106600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:97094600-97102600	Strong transcription	HSMMtube	muscle
14	chr10:97094600-97118000	Weak transcription	HSMM	muscle
15	chr10:97095000-97101800	Strong transcription	Fetal Muscle Leg	muscle
16	chr10:97095000-97110600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:97095200-97102200	Strong transcription	Placenta	Placenta
19	chr10:97095400-97102600	Strong transcription	Brain Anterior Caudate	brain
20	chr10:97096400-97102000	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:97096400-97108400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:97096400-97110600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:97096600-97110600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:97096800-97110600	Weak transcription	Psoas Muscle	Psoas
25	chr10:97097000-97102400	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:97097000-97106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:97097600-97102400	Strong transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:97097800-97110600	Weak transcription	Right Atrium	heart
29	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
30	chr10:97098200-97103200	Weak transcription	Fetal Intestine Large	intestine
31	chr10:97099200-97103600	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:97099200-97105000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:97099200-97106600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:97099200-97106600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:97099200-97106600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:97099200-97106800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr10:97099200-97108400	Weak transcription	Gastric	stomach
38	chr10:97099200-97110600	Weak transcription	Lung	lung
39	chr10:97099200-97110800	Weak transcription	Fetal Intestine Small	intestine
40	chr10:97099200-97113400	Weak transcription	Ovary	ovary
41	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
42	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:97099400-97103400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:97099400-97103400	Weak transcription	Brain Angular Gyrus	brain
45	chr10:97099400-97103600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:97099400-97103600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:97099400-97104400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr10:97099400-97106600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:97099400-97106600	Weak transcription	Pancreas	Pancrea
50	chr10:97099400-97110000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links