Variant report

Variant	rs7090345
Chromosome Location	chr10:97094350-97094351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97091158..97093235-chr10:97093326..97095164,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10882581	0.86[EUR][1000 genomes]
rs10882584	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs10882585	1.00[CEU][hapmap]
rs10882586	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11188272	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs11188276	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs11188279	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs11188280	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs11188286	0.86[EUR][1000 genomes]
rs11188300	1.00[CEU][hapmap];0.80[JPT][hapmap];0.80[EUR][1000 genomes]
rs11813979	0.82[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs12219964	1.00[CEU][hapmap]
rs12220134	1.00[CEU][hapmap]
rs14420	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs1960067	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2274631	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs2274632	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs2296966	1.00[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35338286	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3740510	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs3814155	0.86[EUR][1000 genomes]
rs3818589	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs4918927	1.00[YRI][hapmap]
rs58783242	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6583993	1.00[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67857865	0.80[EUR][1000 genomes]
rs7069281	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7069741	1.00[YRI][hapmap]
rs7085208	1.00[CEU][hapmap]
rs7085990	0.86[EUR][1000 genomes]
rs7088743	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7088852	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7094119	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7096788	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs72822521	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72822522	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7898995	0.82[EUR][1000 genomes]
rs9313	0.85[CEU][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
3	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:97075200-97098800	Weak transcription	Ovary	ovary
8	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
9	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
12	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:97083000-97098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:97084400-97095600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:97087800-97095800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:97087800-97097800	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
18	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:97088400-97095000	Weak transcription	Fetal Heart	heart
20	chr10:97089000-97096400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:97089200-97097200	Weak transcription	Brain Angular Gyrus	brain
22	chr10:97090800-97094600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
23	chr10:97091000-97098000	Genic enhancers	Left Ventricle	heart
24	chr10:97091000-97102000	Strong transcription	Fetal Brain Female	brain
25	chr10:97091400-97095400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:97091600-97099800	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:97091800-97101400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:97092000-97094600	Weak transcription	Brain Germinal Matrix	brain
29	chr10:97092600-97098200	Strong transcription	Fetal Intestine Large	intestine
30	chr10:97092600-97100200	Strong transcription	Liver	Liver
31	chr10:97092800-97094600	Strong transcription	Brain Anterior Caudate	brain
32	chr10:97092800-97094600	Strong transcription	HepG2	liver
33	chr10:97093000-97094600	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:97093000-97094800	Strong transcription	Gastric	stomach
35	chr10:97093200-97094600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:97093200-97095800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:97093200-97097800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:97093200-97099200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr10:97093200-97103600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr10:97093200-97106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:97093400-97095800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:97093400-97103600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr10:97093400-97103600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr10:97093600-97094600	Enhancers	HSMM	muscle
45	chr10:97093600-97095000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:97093600-97095000	Enhancers	NHDF-Ad	bronchial
47	chr10:97093600-97095200	Enhancers	NH-A	brain
48	chr10:97093600-97096600	Genic enhancers	Adipose Nuclei	Adipose
49	chr10:97093600-97096800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:97093800-97095000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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