Variant report

Variant	rs11188279
Chromosome Location	chr10:97087852-97087853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97074843..97077067-chr10:97087421..97090006,2	K562	blood:
2	chr10:97083801..97085402-chr10:97087063..97088908,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10882581	0.91[ASN][1000 genomes]
rs10882584	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882586	0.85[CHB][hapmap];0.89[AMR][1000 genomes]
rs11188272	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11188276	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11188280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188286	0.93[ASN][1000 genomes]
rs11188292	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11188295	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11188300	0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes]
rs11813979	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12217326	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12219964	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs12220134	0.90[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12572852	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs14420	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1960067	0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2274631	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2274632	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2296966	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs35338286	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3740510	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3814155	0.82[ASN][1000 genomes]
rs3818589	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58783242	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6583993	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs67857865	0.89[AMR][1000 genomes]
rs7069281	0.86[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7081119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7081424	0.82[ASN][1000 genomes]
rs7085990	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7088743	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7088852	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7090345	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs7094119	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7096788	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs72822521	0.89[ASN][1000 genomes]
rs72822522	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72822548	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7898995	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9313	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
4	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
5	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:97075200-97098800	Weak transcription	Ovary	ovary
11	chr10:97075800-97089000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:97079400-97101400	Weak transcription	Fetal Kidney	kidney
13	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:97080000-97099000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
16	chr10:97080400-97093200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:97081800-97088800	Weak transcription	Brain Angular Gyrus	brain
19	chr10:97081800-97089200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:97081800-97091000	Weak transcription	Fetal Intestine Large	intestine
21	chr10:97081800-97092600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:97083000-97098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:97083200-97088000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:97083400-97089200	Weak transcription	GM12878-XiMat	blood
25	chr10:97083400-97093000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:97083800-97091000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:97084400-97095600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:97084600-97092600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:97084800-97094200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr10:97085000-97089600	Weak transcription	HUVEC	blood vessel
31	chr10:97085000-97091200	Weak transcription	Brain Germinal Matrix	brain
32	chr10:97085000-97091200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:97085000-97091600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:97085600-97088000	Enhancers	Duodenum Mucosa	Duodenum
35	chr10:97085800-97088800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:97086000-97088000	Enhancers	Gastric	stomach
37	chr10:97086400-97091400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:97086600-97088000	Enhancers	Fetal Muscle Leg	muscle
39	chr10:97087000-97088000	Genic enhancers	Fetal Stomach	stomach
40	chr10:97087000-97088000	Enhancers	Lung	lung
41	chr10:97087000-97088000	Enhancers	Psoas Muscle	Psoas
42	chr10:97087000-97088000	Enhancers	Right Atrium	heart
43	chr10:97087000-97088200	Genic enhancers	Adipose Nuclei	Adipose
44	chr10:97087000-97088400	Enhancers	Fetal Heart	heart
45	chr10:97087000-97089200	Genic enhancers	Stomach Smooth Muscle	stomach
46	chr10:97087200-97088000	Strong transcription	Fetal Intestine Small	intestine
47	chr10:97087200-97088000	Enhancers	Left Ventricle	heart
48	chr10:97087200-97088000	Genic enhancers	Right Ventricle	heart
49	chr10:97087400-97088000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:97087400-97088000	Enhancers	Liver	Liver

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