Variant report

Variant	rs12217326
Chromosome Location	chr10:97102986-97102987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10882581	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882584	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882586	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188272	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11188276	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188279	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11188280	0.94[ASN][1000 genomes]
rs11188286	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188292	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11188300	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1132810	1.00[EUR][1000 genomes]
rs11813979	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12220134	0.85[AMR][1000 genomes]
rs12572852	0.82[AMR][1000 genomes]
rs14420	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1960067	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2274631	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2274632	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2296966	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35338286	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3740510	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3814155	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3818589	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58783242	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6583993	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67857865	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7069281	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7081119	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7085990	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7088743	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088852	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094119	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7096788	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72822521	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72822522	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72822548	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7898995	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9313	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97079400-97106400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
4	chr10:97080400-97106200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
6	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:97093200-97103600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:97093200-97106400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97093400-97103600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:97093400-97103600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:97094400-97106600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:97094600-97118000	Weak transcription	HSMM	muscle
13	chr10:97095000-97110600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:97096400-97108400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:97096400-97110600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:97096600-97110600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:97096800-97110600	Weak transcription	Psoas Muscle	Psoas
19	chr10:97097000-97106200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:97097800-97110600	Weak transcription	Right Atrium	heart
21	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
22	chr10:97098200-97103200	Weak transcription	Fetal Intestine Large	intestine
23	chr10:97099200-97103600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:97099200-97105000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:97099200-97106600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:97099200-97106600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:97099200-97106600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:97099200-97106800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:97099200-97108400	Weak transcription	Gastric	stomach
30	chr10:97099200-97110600	Weak transcription	Lung	lung
31	chr10:97099200-97110800	Weak transcription	Fetal Intestine Small	intestine
32	chr10:97099200-97113400	Weak transcription	Ovary	ovary
33	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
34	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:97099400-97103400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:97099400-97103400	Weak transcription	Brain Angular Gyrus	brain
37	chr10:97099400-97103600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:97099400-97103600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:97099400-97104400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:97099400-97106600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:97099400-97106600	Weak transcription	Pancreas	Pancrea
42	chr10:97099400-97110000	Weak transcription	HMEC	breast
43	chr10:97099400-97110200	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:97099400-97111000	Weak transcription	Brain Substantia Nigra	brain
45	chr10:97099600-97105800	Weak transcription	GM12878-XiMat	blood
46	chr10:97100000-97103400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:97100000-97106600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:97100600-97105200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:97100800-97108600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:97101000-97104800	Enhancers	HepG2	liver

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