Variant report

Variant	rs7085990
Chromosome Location	chr10:97078641-97078642
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97071047..97076253-chr10:97076532..97079541,6	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10882581	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882584	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882585	0.92[EUR][1000 genomes]
rs10882586	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11188272	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11188276	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11188279	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11188280	0.89[ASN][1000 genomes]
rs11188286	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11188292	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188300	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1132810	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11813979	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12217326	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12219964	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12220134	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12572852	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs14420	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1960067	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2274631	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2274632	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2296966	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35338286	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3740510	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3814155	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3818589	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57682907	0.80[EUR][1000 genomes]
rs58783242	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6583993	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67857865	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7069281	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7081119	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7088743	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7088852	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7090345	0.86[EUR][1000 genomes]
rs7094119	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7096788	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72822521	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72822522	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72822548	0.81[AMR][1000 genomes]
rs7898995	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9313	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97069200-97087000	Weak transcription	HSMM	muscle
2	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
3	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
4	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
8	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
9	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
11	chr10:97073000-97085000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:97073000-97085600	Weak transcription	Stomach Mucosa	stomach
13	chr10:97073200-97080400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:97073400-97081000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:97073400-97084200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:97073400-97092600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:97073400-97092800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:97073600-97080800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:97073600-97095200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:97074000-97080600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:97074000-97080600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:97074400-97079000	Weak transcription	HSMMtube	muscle
23	chr10:97074400-97079600	Weak transcription	Lung	lung
24	chr10:97074400-97080400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:97074400-97080800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:97074400-97087400	Weak transcription	Spleen	Spleen
27	chr10:97074400-97095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:97074600-97079400	Weak transcription	Right Ventricle	heart
29	chr10:97074600-97084800	Weak transcription	Right Atrium	heart
30	chr10:97074600-97087000	Strong transcription	Aorta	Aorta
31	chr10:97074600-97095800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:97074800-97079600	Weak transcription	Fetal Intestine Small	intestine
33	chr10:97074800-97080600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:97074800-97087000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr10:97075000-97079200	Weak transcription	Fetal Intestine Large	intestine
36	chr10:97075000-97080400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr10:97075200-97079000	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr10:97075200-97080600	Weak transcription	HepG2	liver
39	chr10:97075200-97087000	Weak transcription	Psoas Muscle	Psoas
40	chr10:97075200-97098800	Weak transcription	Ovary	ovary
41	chr10:97075400-97079000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:97075400-97079200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr10:97075600-97079600	Weak transcription	Brain Angular Gyrus	brain
44	chr10:97075600-97080000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:97075600-97080600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:97075600-97081400	Weak transcription	Gastric	stomach
47	chr10:97075600-97087000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr10:97075800-97079000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:97075800-97089000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:97076000-97082000	Strong transcription	Colon Smooth Muscle	Colon

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