Variant report

Variant	rs4918927
Chromosome Location	chr10:97161500-97161501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97161181..97166322-chr10:97166660..97170109,5	K562	blood:
2	chr10:97161181..97164429-chr10:97166660..97169503,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10882589	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882591	0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs11188273	0.91[CHB][hapmap]
rs11188277	0.91[CHB][hapmap]
rs11188284	0.91[CHB][hapmap]
rs11188301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11188304	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188308	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188312	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12217735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1410058	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1410599	0.81[CHB][hapmap]
rs17110702	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2296966	1.00[YRI][hapmap]
rs3740509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41528346	0.91[CHB][hapmap]
rs4918926	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56155187	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7069741	1.00[YRI][hapmap]
rs7090345	1.00[YRI][hapmap]
rs7098930	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4918927	PIK3AP1	cis	cerebellum	SCAN

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
2	chr10:97150200-97163600	Weak transcription	Stomach Mucosa	stomach
3	chr10:97151000-97166200	Strong transcription	Liver	Liver
4	chr10:97151800-97168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:97152000-97164200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:97153200-97162000	Strong transcription	Fetal Muscle Leg	muscle
7	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:97154600-97168000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:97155200-97161600	Strong transcription	Brain Hippocampus Middle	brain
10	chr10:97155200-97161800	Genic enhancers	Left Ventricle	heart
11	chr10:97155200-97162000	Strong transcription	HepG2	liver
12	chr10:97155400-97161600	Strong transcription	Gastric	stomach
13	chr10:97155400-97168000	Strong transcription	Fetal Intestine Small	intestine
14	chr10:97155400-97170800	Enhancers	Right Atrium	heart
15	chr10:97155600-97161600	Weak transcription	HMEC	breast
16	chr10:97155600-97162000	Strong transcription	Placenta	Placenta
17	chr10:97156000-97166200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:97156600-97162400	Genic enhancers	Colon Smooth Muscle	Colon
19	chr10:97156800-97163600	Strong transcription	Lung	lung
20	chr10:97156800-97164400	Weak transcription	Psoas Muscle	Psoas
21	chr10:97156800-97173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
23	chr10:97157000-97173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:97157000-97174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
26	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
27	chr10:97157600-97162400	Genic enhancers	Rectal Smooth Muscle	rectum
28	chr10:97157800-97162000	Genic enhancers	Right Ventricle	heart
29	chr10:97158200-97163800	Weak transcription	K562	blood
30	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:97158800-97162000	Genic enhancers	Fetal Heart	heart
32	chr10:97158800-97163600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:97158800-97163600	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:97158800-97164400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:97158800-97165800	Weak transcription	Brain Germinal Matrix	brain
36	chr10:97158800-97166400	Weak transcription	Brain Substantia Nigra	brain
37	chr10:97159000-97161800	Weak transcription	Ovary	ovary
38	chr10:97159000-97164400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:97159000-97164400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:97159000-97164800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr10:97159000-97165400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr10:97159000-97165600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr10:97159000-97165600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:97159000-97165600	Weak transcription	Fetal Lung	lung
45	chr10:97159000-97166000	Weak transcription	Brain Angular Gyrus	brain
46	chr10:97159000-97166400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr10:97159000-97166800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr10:97159000-97167800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:97159000-97168000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:97159000-97168000	Weak transcription	HSMM	muscle

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