Variant report

Variant	rs17110702
Chromosome Location	chr10:97153305-97153306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97152224..97154155-chr10:97158166..97160252,2	MCF-7	breast:
2	chr10:97146581..97148830-chr10:97151387..97153337,2	K562	blood:
3	chr10:97151073..97155956-chr10:97162503..97165670,4	K562	blood:
4	chr10:97151153..97154334-chr10:97157587..97160682,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10882589	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882591	1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs11188273	0.91[CHB][hapmap]
rs11188277	0.91[CHB][hapmap]
rs11188284	0.91[CHB][hapmap]
rs11188301	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11188304	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11188308	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11188312	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12217735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1410058	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1410599	0.81[CHB][hapmap]
rs3740509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41528346	0.91[CHB][hapmap]
rs4918926	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918927	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56155187	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7098930	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs874450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17110702	PIK3AP1	cis	cerebellum	SCAN

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:97140600-97158600	Weak transcription	HSMM	muscle
5	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:97144000-97155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:97144400-97154000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:97144400-97155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
10	chr10:97147200-97153800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:97147200-97158800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:97147400-97154000	Genic enhancers	Stomach Smooth Muscle	stomach
13	chr10:97147400-97154400	Genic enhancers	Left Ventricle	heart
14	chr10:97147600-97153400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:97148400-97154400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:97148600-97153400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:97148600-97156600	Weak transcription	Esophagus	oesophagus
18	chr10:97149200-97155600	Weak transcription	Brain Germinal Matrix	brain
19	chr10:97149200-97155800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:97149600-97156600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:97149800-97154600	Genic enhancers	Colon Smooth Muscle	Colon
22	chr10:97149800-97156600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:97150000-97155600	Weak transcription	Spleen	Spleen
24	chr10:97150200-97155600	Weak transcription	Brain Angular Gyrus	brain
25	chr10:97150200-97163600	Weak transcription	Stomach Mucosa	stomach
26	chr10:97150400-97154000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:97150600-97153600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr10:97150800-97153400	Enhancers	Fetal Brain Male	brain
29	chr10:97150800-97153600	Genic enhancers	Fetal Heart	heart
30	chr10:97150800-97155200	Weak transcription	HepG2	liver
31	chr10:97151000-97166200	Strong transcription	Liver	Liver
32	chr10:97151200-97157400	Weak transcription	Fetal Kidney	kidney
33	chr10:97151600-97154200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr10:97151800-97153400	Genic enhancers	Fetal Stomach	stomach
35	chr10:97151800-97153600	Strong transcription	Fetal Intestine Small	intestine
36	chr10:97151800-97154200	Genic enhancers	Aorta	Aorta
37	chr10:97151800-97154200	Enhancers	Right Atrium	heart
38	chr10:97151800-97168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:97152000-97164200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:97152200-97155400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:97152200-97156400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:97152200-97156800	Genic enhancers	Adipose Nuclei	Adipose
43	chr10:97152200-97159000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:97152400-97153400	Genic enhancers	Fetal Muscle Trunk	muscle
45	chr10:97152400-97153400	Genic enhancers	Pancreas	Pancrea
46	chr10:97152400-97153600	Genic enhancers	Rectal Smooth Muscle	rectum
47	chr10:97152400-97153600	Flanking Active TSS	GM12878-XiMat	blood
48	chr10:97152400-97154400	Enhancers	Ovary	ovary
49	chr10:97152400-97160200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:97152600-97153400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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