Variant report

Variant	rs3740509
Chromosome Location	chr10:97130914-97130915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97126867..97129564-chr10:97130715..97133324,2	K562	blood:
2	chr10:97129620..97132009-chr10:97364748..97367399,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10882589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188273	0.91[CHB][hapmap]
rs11188277	0.91[CHB][hapmap]
rs11188284	0.91[CHB][hapmap]
rs11188301	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11188304	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188308	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12217735	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1410058	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1410599	0.81[CHB][hapmap]
rs17110702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41528346	0.91[CHB][hapmap]
rs4918926	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4918927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56155187	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098930	0.97[ASN][1000 genomes]
rs874450	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
3	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:97115800-97131600	Weak transcription	HSMMtube	muscle
6	chr10:97116000-97135000	Weak transcription	Brain Substantia Nigra	brain
7	chr10:97116000-97138200	Weak transcription	Ovary	ovary
8	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:97116800-97135200	Weak transcription	Brain Angular Gyrus	brain
12	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
14	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
15	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:97118000-97135800	Weak transcription	Fetal Brain Female	brain
17	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
18	chr10:97120400-97141400	Weak transcription	Gastric	stomach
19	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
20	chr10:97122000-97135000	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
22	chr10:97122200-97135000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr10:97122400-97131600	Weak transcription	Psoas Muscle	Psoas
24	chr10:97124600-97135200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:97124600-97135200	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:97124800-97134600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:97124800-97137200	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:97125000-97133000	Strong transcription	Placenta	Placenta
29	chr10:97125000-97133600	Strong transcription	Liver	Liver
30	chr10:97125200-97134200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:97126200-97131200	Strong transcription	Right Ventricle	heart
32	chr10:97126200-97139400	Weak transcription	Lung	lung
33	chr10:97126800-97137800	Weak transcription	HepG2	liver
34	chr10:97129000-97135400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:97129200-97132000	Strong transcription	Fetal Intestine Large	intestine
36	chr10:97129200-97133000	Strong transcription	Adipose Nuclei	Adipose
37	chr10:97129400-97131200	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:97129400-97131600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:97129400-97137800	Weak transcription	Right Atrium	heart
40	chr10:97129600-97135000	Weak transcription	Brain Anterior Caudate	brain
41	chr10:97129600-97136400	Strong transcription	Left Ventricle	heart
42	chr10:97130000-97138000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:97130200-97131000	Genic enhancers	Aorta	Aorta
44	chr10:97130200-97131200	Genic enhancers	Stomach Smooth Muscle	stomach
45	chr10:97130200-97141600	Weak transcription	Fetal Intestine Small	intestine
46	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr10:97130400-97131400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:97130400-97131600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr10:97130400-97131800	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr10:97130400-97132000	Strong transcription	Fetal Heart	heart

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