Variant report

Variant	rs11188308
Chromosome Location	chr10:97147957-97147958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:97147914-97148212	T-47D	breast:	n/a	n/a
2	FOXA2	chr10:97147726-97148660	A549	lung:	n/a	n/a
3	SP1	chr10:97147871-97148159	A549	lung:	n/a	n/a
4	FOXA2	chr10:97147837-97148796	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97146581..97148830-chr10:97151387..97153337,2	K562	blood:
2	chr10:97147507..97149685-chr10:97150420..97152173,2	MCF-7	breast:

Variant related genes	Relation type
SORBS1	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10882589	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188301	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11188304	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188312	0.97[ASN][1000 genomes]
rs12217735	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17110702	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3740509	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4918926	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918927	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56155187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7098930	0.99[ASN][1000 genomes]
rs874450	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
4	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
5	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:97137200-97148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:97140000-97148200	Weak transcription	Fetal Heart	heart
10	chr10:97140600-97158600	Weak transcription	HSMM	muscle
11	chr10:97140800-97148000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:97140800-97152400	Weak transcription	Colonic Mucosa	Colon
13	chr10:97142200-97151800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:97142200-97152400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:97142400-97152400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr10:97143000-97148800	Weak transcription	Brain Germinal Matrix	brain
18	chr10:97143000-97151400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:97143600-97151000	Weak transcription	Fetal Lung	lung
20	chr10:97143600-97151400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:97144000-97151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:97144000-97152400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:97144000-97152400	Weak transcription	Psoas Muscle	Psoas
24	chr10:97144000-97155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:97144200-97149400	Weak transcription	HSMMtube	muscle
26	chr10:97144200-97151600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:97144400-97148200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:97144400-97149400	Weak transcription	Aorta	Aorta
29	chr10:97144400-97152400	Weak transcription	Ovary	ovary
30	chr10:97144400-97154000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:97144400-97155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:97144600-97149600	Weak transcription	Lung	lung
33	chr10:97144800-97148000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:97145000-97148000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:97145000-97150200	Enhancers	Stomach Mucosa	stomach
36	chr10:97145000-97151200	Weak transcription	Fetal Brain Female	brain
37	chr10:97145000-97153200	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:97145800-97150200	Enhancers	Liver	Liver
39	chr10:97146000-97148000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:97146200-97149400	Weak transcription	Fetal Intestine Small	intestine
41	chr10:97146400-97148200	Weak transcription	Fetal Intestine Large	intestine
42	chr10:97146400-97148200	Strong transcription	Fetal Stomach	stomach
43	chr10:97146400-97152400	Enhancers	GM12878-XiMat	blood
44	chr10:97146600-97148000	Weak transcription	Placenta	Placenta
45	chr10:97146800-97148600	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
47	chr10:97147000-97150000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:97147000-97150400	Enhancers	Brain Hippocampus Middle	brain
49	chr10:97147000-97150800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:97147000-97152600	Enhancers	Cortex derived primary cultured neurospheres	brain

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