Variant report

Variant	rs874450
Chromosome Location	chr10:97148561-97148562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:97148308-97148604	T-47D	breast:	n/a	chr10:97148479-97148494 chr10:97148523-97148538
2	NFIC	chr10:97148237-97148746	HepG2	liver:	n/a	n/a
3	SP1	chr10:97148254-97148651	A549	lung:	n/a	n/a
4	EP300	chr10:97148217-97148676	HepG2	liver:	n/a	chr10:97148480-97148490
5	REST	chr10:97148314-97148676	MCF-7	breast:	n/a	chr10:97148564-97148573
6	TCF7L2	chr10:97148314-97148657	PANC-1	pancreas:	n/a	n/a
7	HDAC2	chr10:97148252-97148704	HepG2	liver:	n/a	chr10:97148508-97148516 chr10:97148678-97148692 chr10:97148673-97148687
8	EP300	chr10:97148344-97148647	HepG2	liver:	n/a	chr10:97148480-97148490
9	TEAD4	chr10:97148192-97148760	HepG2	liver:	n/a	n/a
10	MYBL2	chr10:97148288-97148812	HepG2	liver:	n/a	n/a
11	FOXA2	chr10:97147726-97148660	A549	lung:	n/a	n/a
12	POLR2A	chr10:97148255-97148618	U87	brain:	n/a	n/a
13	FOXA1	chr10:97148146-97148673	HepG2	liver:	n/a	chr10:97148479-97148494 chr10:97148523-97148538
14	FOXA1	chr10:97148261-97148793	HepG2	liver:	n/a	chr10:97148479-97148494 chr10:97148523-97148538
15	MYBL2	chr10:97148225-97148692	HepG2	liver:	n/a	n/a
16	HEY1	chr10:97148241-97148610	HepG2	liver:	n/a	n/a
17	POLR2A	chr10:97148218-97148618	U87	brain:	n/a	n/a
18	FOXA2	chr10:97147837-97148796	A549	lung:	n/a	n/a
19	CEBPB	chr10:97148294-97148667	HepG2	liver:	n/a	chr10:97148551-97148562
20	FOXA1	chr10:97148248-97148837	HepG2	liver:	n/a	chr10:97148479-97148494 chr10:97148523-97148538
21	TCF12	chr10:97148294-97148699	A549	lung:	n/a	chr10:97148528-97148537
22	CEBPB	chr10:97148397-97148641	HepG2	liver:	n/a	chr10:97148551-97148562
23	FOXA1	chr10:97148212-97148688	T-47D	breast:	n/a	chr10:97148479-97148494 chr10:97148523-97148538
24	CEBPB	chr10:97148333-97148735	HepG2	liver:	n/a	chr10:97148551-97148562
25	EP300	chr10:97148252-97148730	HepG2	liver:	n/a	chr10:97148480-97148490 chr10:97148668-97148682 chr10:97148674-97148688
26	CEBPB	chr10:97148314-97148745	HepG2	liver:	n/a	chr10:97148551-97148562
27	NFIC	chr10:97148109-97148708	HepG2	liver:	n/a	chr10:97148172-97148200
28	FOXA2	chr10:97148257-97148658	HepG2	liver:	n/a	n/a
29	POLR2A	chr10:97148145-97148620	HepG2	liver:	n/a	n/a
30	MXI1	chr10:97148296-97148670	HepG2	liver:	n/a	n/a
31	FOXA2	chr10:97147993-97148907	HepG2	liver:	n/a	n/a
32	FOXA1	chr10:97148177-97148669	HepG2	liver:	n/a	chr10:97148479-97148494 chr10:97148523-97148538
33	JUND	chr10:97148354-97148666	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97146581..97148830-chr10:97151387..97153337,2	K562	blood:
2	chr10:97147507..97149685-chr10:97150420..97152173,2	MCF-7	breast:

Variant related genes	Relation type
SORBS1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10882589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188273	0.91[CHB][hapmap]
rs11188277	0.91[CHB][hapmap]
rs11188284	0.91[CHB][hapmap]
rs11188301	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11188304	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11188308	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12217735	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1410058	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1410599	0.81[CHB][hapmap]
rs17110702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3740509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41528346	0.91[CHB][hapmap]
rs4918926	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56155187	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7098930	0.99[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
3	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:97140600-97158600	Weak transcription	HSMM	muscle
7	chr10:97140800-97152400	Weak transcription	Colonic Mucosa	Colon
8	chr10:97142200-97151800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:97142200-97152400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:97142400-97152400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:97143000-97148800	Weak transcription	Brain Germinal Matrix	brain
13	chr10:97143000-97151400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:97143600-97151000	Weak transcription	Fetal Lung	lung
15	chr10:97143600-97151400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:97144000-97151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:97144000-97152400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:97144000-97152400	Weak transcription	Psoas Muscle	Psoas
19	chr10:97144000-97155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:97144200-97149400	Weak transcription	HSMMtube	muscle
21	chr10:97144200-97151600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:97144400-97149400	Weak transcription	Aorta	Aorta
23	chr10:97144400-97152400	Weak transcription	Ovary	ovary
24	chr10:97144400-97154000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:97144400-97155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:97144600-97149600	Weak transcription	Lung	lung
27	chr10:97145000-97150200	Enhancers	Stomach Mucosa	stomach
28	chr10:97145000-97151200	Weak transcription	Fetal Brain Female	brain
29	chr10:97145000-97153200	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:97145800-97150200	Enhancers	Liver	Liver
31	chr10:97146200-97149400	Weak transcription	Fetal Intestine Small	intestine
32	chr10:97146400-97152400	Enhancers	GM12878-XiMat	blood
33	chr10:97146800-97148600	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
35	chr10:97147000-97150000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:97147000-97150400	Enhancers	Brain Hippocampus Middle	brain
37	chr10:97147000-97150800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:97147000-97152600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr10:97147200-97150200	Enhancers	Brain Angular Gyrus	brain
40	chr10:97147200-97150200	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr10:97147200-97152000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:97147200-97152400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:97147200-97153800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:97147200-97158800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
45	chr10:97147400-97148600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr10:97147400-97148600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:97147400-97148800	Enhancers	Gastric	stomach
48	chr10:97147400-97149200	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr10:97147400-97150200	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr10:97147400-97150800	Enhancers	Right Atrium	heart

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